Information for 12-TGCCAGAC (Motif 6)

C G A T A T C G A T G C A G T C C T G A C T A G T C G A T G A C
Reverse Opposite:
A C T G A G C T A G T C A G C T C T A G T A C G T A G C G C T A
p-value:1e-124
log p-value:-2.860e+02
Information Content per bp:1.797
Number of Target Sequences with motif3506.0
Percentage of Target Sequences with motif52.88%
Number of Background Sequences with motif16564.3
Percentage of Background Sequences with motif38.46%
Average Position of motif in Targets322.4 +/- 225.3bp
Average Position of motif in Background281.0 +/- 178.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.48
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAGAC-
ATGCCAGACN
 A C G T C G A T A T C G A T G C A G T C C T G A C T A G T C G A T G A C A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:TGCCAGAC--
--CCAGACAG
 C G A T A T C G A T G C A G T C C T G A C T A G T C G A T G A C A C G T A C G T
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:TGCCAGAC----
--CCAGACRSVB
 C G A T A T C G A T G C A G T C C T G A C T A G T C G A T G A C A C G T A C G T A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---TGCCAGAC-
AGGTGHCAGACA
 A C G T A C G T A C G T C G A T A T C G A T G C A G T C C T G A C T A G T C G A T G A C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---TGCCAGAC------
CAAATCCAGACATCACA
 A C G T A C G T A C G T C G A T A T C G A T G C A G T C C T G A C T A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:TGCCAGAC-
-TCTAGACA
 C G A T A T C G A T G C A G T C C T G A C T A G T C G A T G A C A C G T
A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---TGCCAGAC--
AGGTGNCAGACAG
 A C G T A C G T A C G T C G A T A T C G A T G C A G T C C T G A C T A G T C G A T G A C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TGCCAGAC--
--BCAGACWA
 C G A T A T C G A T G C A G T C C T G A C T A G T C G A T G A C A C G T A C G T
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGAC
CGTGCCAAG-
 A C G T A C G T C G A T A T C G A T G C A G T C C T G A C T A G T C G A T G A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGAC
TTGCCAAG-
 A C G T C G A T A T C G A T G C A G T C C T G A C T A G T C G A T G A C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T