Information for 5-WAACCWCA (Motif 3)

C G A T C T G A T G C A A G T C A G T C C G T A A G T C C G T A
Reverse Opposite:
C G A T A C T G C G A T A C T G A C T G A C G T G A C T C G T A
p-value:1e-308
log p-value:-7.104e+02
Information Content per bp:1.775
Number of Target Sequences with motif2712.0
Percentage of Target Sequences with motif38.62%
Number of Background Sequences with motif8215.9
Percentage of Background Sequences with motif19.25%
Average Position of motif in Targets317.2 +/- 215.8bp
Average Position of motif in Background282.1 +/- 179.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-WAACCWCA-
NAAACCACAG
 A C G T C G A T C T G A T G C A A G T C A G T C C G T A A G T C C G T A A C G T
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-WAACCWCA---
NWAACCACADNN
 A C G T C G A T C T G A T G C A A G T C A G T C C G T A A G T C C G T A A C G T A C G T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:WAACCWCA--
AAACCACANN
 C G A T C T G A T G C A A G T C A G T C C G T A A G T C C G T A A C G T A C G T
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:WAACCWCA--
AAACCACAGC
 C G A T C T G A T G C A A G T C A G T C C G T A A G T C C G T A A C G T A C G T
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:WAACCWCA---
AAACCACAGAN
 C G A T C T G A T G C A A G T C A G T C C G T A A G T C C G T A A C G T A C G T A C G T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX2/MA0511.2/Jaspar

Match Rank:6
Score:0.86
Offset:0
Orientation:forward strand
Alignment:WAACCWCA-
AAACCGCAA
 C G A T C T G A T G C A A G T C A G T C C G T A A G T C C G T A A C G T
G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A

RUNX3/MA0684.1/Jaspar

Match Rank:7
Score:0.86
Offset:0
Orientation:forward strand
Alignment:WAACCWCA--
AAACCGCAAA
 C G A T C T G A T G C A A G T C A G T C C G T A A G T C C G T A A C G T A C G T
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:WAACCWCA
TGACCTYA
 C G A T C T G A T G C A A G T C A G T C C G T A A G T C C G T A
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:forward strand
Alignment:WAACCWCA
-ATCCAC-
 C G A T C T G A T G C A A G T C A G T C C G T A A G T C C G T A
A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:WAACCWCA
TGACCYCT
 C G A T C T G A T G C A A G T C A G T C C G T A A G T C C G T A
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T