Information for 8-CCAGACRG (Motif 4)

A G T C G A T C C G T A T A C G G C T A A G T C C T G A A C T G
Reverse Opposite:
T G A C G A C T T C A G C G A T A T G C C G A T C T A G T C A G
p-value:1e-173
log p-value:-4.005e+02
Information Content per bp:1.678
Number of Target Sequences with motif3542.0
Percentage of Target Sequences with motif50.43%
Number of Background Sequences with motif14540.2
Percentage of Background Sequences with motif34.06%
Average Position of motif in Targets319.6 +/- 227.2bp
Average Position of motif in Background284.0 +/- 178.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:CCAGACRG
CCAGACAG
 A G T C G A T C C G T A T A C G G C T A A G T C C T G A A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:CCAGACRG--
CCAGACRSVB
 A G T C G A T C C G T A T A C G G C T A A G T C C T G A A C T G A C G T A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.95
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACRG----
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A T A C G G C T A A G T C C T G A A C T G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4/MA1153.1/Jaspar

Match Rank:4
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CCAGACRG
TCTAGACA-
 A C G T A G T C G A T C C G T A T A C G G C T A A G T C C T G A A C T G
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACRG
ATGCCAGACN-
 A C G T A C G T A C G T A G T C G A T C C G T A T A C G G C T A A G T C C T G A A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:CCAGACRG
BCAGACWA
 A G T C G A T C C G T A T A C G G C T A A G T C C T G A A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACRG
AGGTGHCAGACA-
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A T A C G G C T A A G T C C T G A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:8
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CCAGACRG--
RHHCAGAGAGGB
 A C G T A C G T A G T C G A T C C G T A T A C G G C T A A G T C C T G A A C T G A C G T A C G T
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CCAGACRG
AGGTGNCAGACAG
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A T A C G G C T A A G T C C T G A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

SMAD3/MA0795.1/Jaspar

Match Rank:10
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCAGACRG
CGTCTAGACA-
 A C G T A C G T A C G T A G T C G A T C C G T A T A C G G C T A A G T C C T G A A C T G
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T