Information for 14-HRWGCCAA (Motif 6)

G A T C T C A G C G A T A C T G A G T C G T A C C T G A T C G A
Reverse Opposite:
A G C T G A C T C A T G A C T G G T A C G C T A A G T C C T A G
p-value:1e-104
log p-value:-2.410e+02
Information Content per bp:1.664
Number of Target Sequences with motif3227.0
Percentage of Target Sequences with motif45.95%
Number of Background Sequences with motif14252.1
Percentage of Background Sequences with motif33.39%
Average Position of motif in Targets330.9 +/- 232.9bp
Average Position of motif in Background281.5 +/- 182.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:HRWGCCAA-
CGTGCCAAG
 G A T C T C A G C G A T A C T G A G T C G T A C C T G A T C G A A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.90
Offset:0
Orientation:forward strand
Alignment:HRWGCCAA--
GGTGCCAAGT
 G A T C T C A G C G A T A C T G A G T C G T A C C T G A T C G A A C G T A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:HRWGCCAA---
NNTGCCAAGNN
 G A T C T C A G C G A T A C T G A G T C G T A C C T G A T C G A A C G T A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.83
Offset:1
Orientation:forward strand
Alignment:HRWGCCAA--
-ATGCCAACC
 G A T C T C A G C G A T A C T G A G T C G T A C C T G A T C G A A C G T A C G T
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.77
Offset:1
Orientation:forward strand
Alignment:HRWGCCAA-
-TTGCCAAG
 G A T C T C A G C G A T A C T G A G T C G T A C C T G A T C G A A C G T
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--HRWGCCAA------
ACTATGCCAACCTACC
 A C G T A C G T G A T C T C A G C G A T A C T G A G T C G T A C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.74
Offset:2
Orientation:forward strand
Alignment:HRWGCCAA----
--AGCCAATCGG
 G A T C T C A G C G A T A C T G A G T C G T A C C T G A T C G A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.72
Offset:1
Orientation:forward strand
Alignment:HRWGCCAA--
-ATGCCCACC
 G A T C T C A G C G A T A C T G A G T C G T A C C T G A T C G A A C G T A C G T
A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-HRWGCCAA---
ACTAGCCAATCA
 A C G T G A T C T C A G C G A T A C T G A G T C G T A C C T G A T C G A A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:10
Score:0.71
Offset:2
Orientation:forward strand
Alignment:HRWGCCAA--
--TGCCAGCB
 G A T C T C A G C G A T A C T G A G T C G T A C C T G A T C G A A C G T A C G T
A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G