Information for 10-CCAGACRG (Motif 5)

A G T C G A T C G C T A T A C G G C T A G A T C C T A G A C T G
Reverse Opposite:
T G A C G A T C C T A G C G A T A T G C C G A T C T A G T C A G
p-value:1e-155
log p-value:-3.573e+02
Information Content per bp:1.650
Number of Target Sequences with motif2697.0
Percentage of Target Sequences with motif40.68%
Number of Background Sequences with motif11071.1
Percentage of Background Sequences with motif25.69%
Average Position of motif in Targets321.2 +/- 219.9bp
Average Position of motif in Background279.9 +/- 179.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:CCAGACRG
CCAGACAG
 A G T C G A T C G C T A T A C G G C T A G A T C C T A G A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:CCAGACRG--
CCAGACRSVB
 A G T C G A T C G C T A T A C G G C T A G A T C C T A G A C T G A C G T A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.94
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACRG----
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A T A C G G C T A G A T C C T A G A C T G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:4
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACRG
ATGCCAGACN-
 A C G T A C G T A C G T A G T C G A T C G C T A T A C G G C T A G A T C C T A G A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CCAGACRG
BCAGACWA
 A G T C G A T C G C T A T A C G G C T A G A T C C T A G A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACRG
AGGTGHCAGACA-
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A T A C G G C T A G A T C C T A G A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----CCAGACRG
AGGTGNCAGACAG
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A T A C G G C T A G A T C C T A G A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CCAGACRG-----
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A C G T A G T C G A T C G C T A T A C G G C T A G A T C C T A G A C T G A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCAGACRG-
AACAGATGGC
 A C G T A G T C G A T C G C T A T A C G G C T A G A T C C T A G A C T G A C G T
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

MA0461.1_Atoh1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCAGACRG-
-CAGATGGC
 A G T C G A T C G C T A T A C G G C T A G A T C C T A G A C T G A C G T
A C G T A G T C C G T A A C T G G T C A C G A T A C T G A C T G A G T C