Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 6630)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 43101)	% of Background Sequences with Motif
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-839	-1.934e+03	0.0000	3227.0	48.67%	6853.0	15.90%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-818	-1.885e+03	0.0000	2906.0	43.83%	5654.3	13.12%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-782	-1.802e+03	0.0000	3178.0	47.93%	7001.9	16.25%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-753	-1.734e+03	0.0000	3323.0	50.12%	7843.1	18.20%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-616	-1.419e+03	0.0000	2061.0	31.09%	3579.3	8.31%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-495	-1.141e+03	0.0000	1577.0	23.79%	2535.1	5.88%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-261	-6.018e+02	0.0000	2661.0	40.14%	9193.0	21.33%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-258	-5.941e+02	0.0000	3316.0	50.02%	12852.0	29.83%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-257	-5.921e+02	0.0000	2597.0	39.17%	8913.1	20.69%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-245	-5.662e+02	0.0000	2602.0	39.25%	9091.7	21.10%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-231	-5.319e+02	0.0000	1064.0	16.05%	2225.1	5.16%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-226	-5.204e+02	0.0000	2883.0	43.48%	10900.5	25.30%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-207	-4.788e+02	0.0000	1604.0	24.19%	4659.1	10.81%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-200	-4.605e+02	0.0000	1174.0	17.71%	2885.9	6.70%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-197	-4.550e+02	0.0000	888.0	13.39%	1808.5	4.20%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-197	-4.544e+02	0.0000	1256.0	18.94%	3246.9	7.54%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-150	-3.473e+02	0.0000	1834.0	27.66%	6499.5	15.08%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-149	-3.443e+02	0.0000	1962.0	29.59%	7176.4	16.65%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-145	-3.340e+02	0.0000	2693.0	40.62%	11245.4	26.10%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-135	-3.130e+02	0.0000	2329.0	35.13%	9380.5	21.77%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-130	-3.014e+02	0.0000	3221.0	48.58%	14659.1	34.02%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-125	-2.887e+02	0.0000	2948.0	44.46%	13147.7	30.51%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-114	-2.644e+02	0.0000	3801.0	57.33%	18680.1	43.35%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-112	-2.600e+02	0.0000	2113.0	31.87%	8643.4	20.06%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-110	-2.545e+02	0.0000	2801.0	42.25%	12623.8	29.30%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-107	-2.470e+02	0.0000	2164.0	32.64%	9042.9	20.99%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-103	-2.373e+02	0.0000	3791.0	57.18%	18934.5	43.94%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-99	-2.286e+02	0.0000	1566.0	23.62%	5981.0	13.88%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-91	-2.097e+02	0.0000	413.0	6.23%	829.6	1.93%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-88	-2.046e+02	0.0000	3617.0	54.56%	18226.5	42.30%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-86	-1.999e+02	0.0000	3738.0	56.38%	19064.9	44.25%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-77	-1.779e+02	0.0000	2269.0	34.22%	10352.8	24.03%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-61	-1.427e+02	0.0000	284.0	4.28%	573.2	1.33%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-57	-1.324e+02	0.0000	2135.0	32.20%	10138.5	23.53%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-57	-1.320e+02	0.0000	1076.0	16.23%	4255.0	9.87%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-54	-1.259e+02	0.0000	5156.0	77.77%	29799.3	69.16%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-52	-1.200e+02	0.0000	292.0	4.40%	674.6	1.57%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-50	-1.174e+02	0.0000	840.0	12.67%	3176.5	7.37%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-49	-1.144e+02	0.0000	256.0	3.86%	560.3	1.30%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-49	-1.129e+02	0.0000	3230.0	48.72%	17122.2	39.74%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-48	-1.110e+02	0.0000	3157.0	47.62%	16695.8	38.75%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-46	-1.074e+02	0.0000	1254.0	18.91%	5455.7	12.66%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-43	-9.954e+01	0.0000	260.0	3.92%	627.0	1.46%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-43	-9.901e+01	0.0000	1703.0	25.69%	8090.8	18.78%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-39	-9.158e+01	0.0000	3593.0	54.19%	19840.3	46.04%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-39	-9.154e+01	0.0000	3919.0	59.11%	21968.6	50.98%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-37	-8.634e+01	0.0000	2328.0	35.11%	12001.7	27.85%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-36	-8.371e+01	0.0000	1504.0	22.68%	7167.1	16.63%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-36	-8.309e+01	0.0000	1754.0	26.46%	8628.9	20.03%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-32	-7.428e+01	0.0000	493.0	7.44%	1807.6	4.19%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-32	-7.395e+01	0.0000	2009.0	30.30%	10299.6	23.90%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-31	-7.281e+01	0.0000	1652.0	24.92%	8199.1	19.03%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-30	-7.124e+01	0.0000	747.0	11.27%	3133.2	7.27%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-29	-6.903e+01	0.0000	873.0	13.17%	3834.8	8.90%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-29	-6.775e+01	0.0000	590.0	8.90%	2351.9	5.46%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-29	-6.734e+01	0.0000	1186.0	17.89%	5596.6	12.99%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-28	-6.553e+01	0.0000	2460.0	37.10%	13216.0	30.67%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-27	-6.409e+01	0.0000	976.0	14.72%	4464.3	10.36%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-27	-6.366e+01	0.0000	4697.0	70.84%	27783.8	64.48%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-27	-6.317e+01	0.0000	510.0	7.69%	1987.9	4.61%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-27	-6.232e+01	0.0000	989.0	14.92%	4562.0	10.59%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-26	-6.215e+01	0.0000	845.0	12.75%	3769.0	8.75%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-23	-5.497e+01	0.0000	2059.0	31.06%	10982.1	25.49%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-23	-5.387e+01	0.0000	812.0	12.25%	3697.1	8.58%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-23	-5.343e+01	0.0000	378.0	5.70%	1415.0	3.28%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-21	-5.051e+01	0.0000	2146.0	32.37%	11616.3	26.96%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-19	-4.382e+01	0.0000	1293.0	19.50%	6621.3	15.37%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-18	-4.369e+01	0.0000	1743.0	26.29%	9316.5	21.62%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-18	-4.168e+01	0.0000	3074.0	46.37%	17676.6	41.02%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-16	-3.869e+01	0.0000	1142.0	17.22%	5837.7	13.55%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-15	-3.649e+01	0.0000	1213.0	18.30%	6302.2	14.63%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-15	-3.609e+01	0.0000	1911.0	28.82%	10533.9	24.45%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-15	-3.538e+01	0.0000	167.0	2.52%	544.5	1.26%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-15	-3.481e+01	0.0000	1059.0	15.97%	5430.8	12.60%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-14	-3.395e+01	0.0000	260.0	3.92%	1000.7	2.32%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-13	-3.219e+01	0.0000	734.0	11.07%	3598.4	8.35%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-13	-3.208e+01	0.0000	2078.0	31.34%	11680.1	27.11%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-13	-3.128e+01	0.0000	5859.0	88.37%	36704.5	85.18%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-13	-3.017e+01	0.0000	1078.0	16.26%	5644.4	13.10%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-13	-2.993e+01	0.0000	1083.0	16.33%	5679.7	13.18%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-11	-2.670e+01	0.0000	436.0	6.58%	2015.1	4.68%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-10	-2.491e+01	0.0000	1341.0	20.23%	7359.7	17.08%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-10	-2.479e+01	0.0000	545.0	8.22%	2656.9	6.17%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-10	-2.389e+01	0.0000	1162.0	17.53%	6305.0	14.63%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-10	-2.365e+01	0.0000	2778.0	41.90%	16383.9	38.02%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-9	-2.094e+01	0.0000	2653.0	40.02%	15693.8	36.42%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-8	-2.060e+01	0.0000	798.0	12.04%	4215.0	9.78%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-8	-1.996e+01	0.0000	248.0	3.74%	1088.3	2.53%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-8	-1.908e+01	0.0000	540.0	8.14%	2738.1	6.35%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-7	-1.800e+01	0.0000	898.0	13.54%	4880.9	11.33%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-7	-1.775e+01	0.0000	392.0	5.91%	1917.2	4.45%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-7	-1.635e+01	0.0000	2560.0	38.61%	15299.2	35.51%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-6	-1.549e+01	0.0000	681.0	10.27%	3652.7	8.48%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-6	-1.542e+01	0.0000	279.0	4.21%	1323.8	3.07%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-6	-1.459e+01	0.0000	468.0	7.06%	2419.4	5.61%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-6	-1.457e+01	0.0000	2719.0	41.01%	16403.0	38.07%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-6	-1.414e+01	0.0000	1697.0	25.60%	9939.1	23.07%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-5	-1.260e+01	0.0000	423.0	6.38%	2203.3	5.11%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-5	-1.236e+01	0.0000	460.0	6.94%	2426.3	5.63%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-4	-1.108e+01	0.0000	1064.0	16.05%	6130.0	14.23%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-1.014e+01	0.0001	2360.0	35.60%	14345.5	33.29%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-4	-9.904e+00	0.0001	338.0	5.10%	1771.6	4.11%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-4	-9.564e+00	0.0002	496.0	7.48%	2718.5	6.31%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-4	-9.339e+00	0.0002	1967.0	29.67%	11887.9	27.59%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-3	-9.188e+00	0.0003	584.0	8.81%	3261.6	7.57%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-3	-8.914e+00	0.0003	416.0	6.27%	2259.8	5.24%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-3	-8.499e+00	0.0005	355.0	5.35%	1908.2	4.43%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-3	-8.417e+00	0.0005	462.0	6.97%	2550.8	5.92%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-7.296e+00	0.0016	538.0	8.11%	3050.1	7.08%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-3	-7.273e+00	0.0017	205.0	3.09%	1058.3	2.46%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-3	-7.054e+00	0.0021	764.0	11.52%	4450.7	10.33%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-3	-6.982e+00	0.0022	198.0	2.99%	1024.5	2.38%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-6.856e+00	0.0025	178.0	2.68%	911.1	2.11%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-6.515e+00	0.0034	1304.0	19.67%	7859.3	18.24%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-2	-6.399e+00	0.0038	835.0	12.59%	4923.1	11.43%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-6.352e+00	0.0040	863.0	13.02%	5100.7	11.84%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-6.172e+00	0.0047	217.0	3.27%	1155.9	2.68%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-2	-5.602e+00	0.0083	344.0	5.19%	1933.3	4.49%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-2	-5.442e+00	0.0096	1890.0	28.51%	11660.2	27.06%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-5.297e+00	0.0110	1891.0	28.52%	11678.8	27.10%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-5.275e+00	0.0112	1680.0	25.34%	10332.8	23.98%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-5.178e+00	0.0122	725.0	10.94%	4302.7	9.99%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-5.137e+00	0.0126	102.0	1.54%	510.4	1.18%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-4.920e+00	0.0155	2851.0	43.00%	17888.5	41.52%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-4.910e+00	0.0156	1349.0	20.35%	8253.7	19.15%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-4.852e+00	0.0164	400.0	6.03%	2304.5	5.35%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-4.833e+00	0.0165	238.0	3.59%	1319.7	3.06%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-4.763e+00	0.0176	821.0	12.38%	4927.1	11.43%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-4.129e+00	0.0330	546.0	8.24%	3243.5	7.53%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-4.061e+00	0.0350	1118.0	16.86%	6851.8	15.90%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-4.008e+00	0.0366	522.0	7.87%	3100.0	7.19%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-3.459e+00	0.0629	465.0	7.01%	2775.4	6.44%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-3.047e+00	0.0943	101.0	1.52%	552.5	1.28%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-2.929e+00	0.1053	1667.0	25.14%	10464.4	24.29%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.863e+00	0.1117	440.0	6.64%	2654.9	6.16%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-2.848e+00	0.1125	222.0	3.35%	1296.9	3.01%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-2.758e+00	0.1222	248.0	3.74%	1461.8	3.39%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-1	-2.572e+00	0.1462	731.0	11.03%	4515.9	10.48%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.403e+00	0.1719	863.0	13.02%	5371.5	12.47%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.308e+00	0.1875	1028.0	15.51%	6435.2	14.93%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.185e+00	0.2106	2391.0	36.06%	15229.8	35.34%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.122e+00	0.2227	773.0	11.66%	4824.9	11.20%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.093e+00	0.2277	687.0	10.36%	4278.1	9.93%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.006e+00	0.2467	1186.0	17.89%	7483.8	17.37%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.972e+00	0.2535	429.0	6.47%	2647.1	6.14%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.930e+00	0.2624	504.0	7.60%	3127.6	7.26%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.901e+00	0.2684	718.0	10.83%	4495.7	10.43%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.823e+00	0.2882	30.0	0.45%	160.3	0.37%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.612e+00	0.3535	949.0	14.31%	6010.6	13.95%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.557e+00	0.3708	2754.0	41.54%	17686.2	41.05%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.501e+00	0.3898	160.0	2.41%	977.1	2.27%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.410e+00	0.4239	3104.0	46.82%	19987.1	46.39%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.270e+00	0.4847	817.0	12.32%	5207.3	12.08%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.260e+00	0.4863	460.0	6.94%	2911.4	6.76%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.152e+00	0.5382	175.0	2.64%	1095.8	2.54%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.139e+00	0.5418	94.0	1.42%	580.1	1.35%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-9.421e-01	0.6555	73.0	1.10%	457.1	1.06%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.878e-01	0.6877	1225.0	18.48%	7913.2	18.36%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-8.138e-01	0.7358	256.0	3.86%	1647.5	3.82%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-7.857e-01	0.7520	16.0	0.24%	99.3	0.23%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.522e-01	0.7729	734.0	11.07%	4756.1	11.04%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-5.095e-01	0.9790	24.0	0.36%	163.0	0.38%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-5.077e-01	0.9790	33.0	0.50%	222.3	0.52%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-4.997e-01	0.9790	696.0	10.50%	4565.5	10.60%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.275e-01	1.0000	191.0	2.88%	1274.3	2.96%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.275e-01	1.0000	191.0	2.88%	1274.3	2.96%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.893e-01	1.0000	652.0	9.83%	4308.4	10.00%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.530e-01	1.0000	27.0	0.41%	200.9	0.47%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.515e-01	1.0000	3234.0	48.78%	21217.7	49.24%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.502e-01	1.0000	81.0	1.22%	570.1	1.32%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.096e-01	1.0000	193.0	2.91%	1332.3	3.09%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.908e-01	1.0000	33.0	0.50%	249.1	0.58%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.680e-01	1.0000	476.0	7.18%	3232.3	7.50%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.667e-01	1.0000	1289.0	19.44%	8590.9	19.94%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.193e-01	1.0000	852.0	12.85%	5752.3	13.35%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.644e-02	1.0000	128.0	1.93%	930.6	2.16%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-8.958e-02	1.0000	2875.0	43.36%	19041.4	44.19%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-8.731e-02	1.0000	2119.0	31.96%	14111.5	32.75%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.383e-02	1.0000	942.0	14.21%	6394.3	14.84%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.215e-02	1.0000	147.0	2.22%	1079.9	2.51%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.062e-02	1.0000	7.0	0.11%	75.1	0.17%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.416e-02	1.0000	289.0	4.36%	2056.4	4.77%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-5.012e-02	1.0000	2.0	0.03%	31.6	0.07%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-4.030e-02	1.0000	277.0	4.18%	1990.5	4.62%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.909e-02	1.0000	95.0	1.43%	733.9	1.70%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.455e-02	1.0000	23.0	0.35%	211.1	0.49%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.150e-02	1.0000	1451.0	21.89%	9840.1	22.84%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.018e-02	1.0000	960.0	14.48%	6593.2	15.30%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.960e-02	1.0000	142.0	2.14%	1073.4	2.49%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.731e-02	1.0000	7.0	0.11%	84.4	0.20%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.064e-02	1.0000	3834.0	57.83%	25447.6	59.06%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.660e-02	1.0000	1214.0	18.31%	8330.6	19.33%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.599e-02	1.0000	863.0	13.02%	5996.7	13.92%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.550e-02	1.0000	362.0	5.46%	2619.1	6.08%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.526e-02	1.0000	4639.0	69.97%	30667.3	71.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.387e-02	1.0000	1266.0	19.10%	8690.2	20.17%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.301e-02	1.0000	92.0	1.39%	744.1	1.73%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-7.244e-03	1.0000	155.0	2.34%	1213.4	2.82%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.978e-03	1.0000	415.0	6.26%	3029.4	7.03%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-5.816e-03	1.0000	5175.0	78.05%	34174.8	79.31%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.824e-03	1.0000	193.0	2.91%	1496.9	3.47%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.813e-03	1.0000	646.0	9.74%	4614.2	10.71%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.186e-03	1.0000	937.0	14.13%	6584.4	15.28%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-4.139e-03	1.0000	122.0	1.84%	993.6	2.31%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.913e-03	1.0000	318.0	4.80%	2379.1	5.52%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.087e-03	1.0000	396.0	5.97%	2929.2	6.80%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.500e-03	1.0000	544.0	8.21%	3980.5	9.24%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.163e-03	1.0000	1069.0	16.12%	7551.5	17.53%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.790e-04	1.0000	495.0	7.47%	3694.2	8.57%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.730e-04	1.0000	1621.0	24.45%	11296.5	26.22%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.180e-04	1.0000	202.0	3.05%	1645.7	3.82%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.050e-04	1.0000	73.0	1.10%	694.2	1.61%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.860e-04	1.0000	191.0	2.88%	1581.0	3.67%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.790e-04	1.0000	1382.0	20.84%	9762.6	22.66%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.280e-04	1.0000	1873.0	28.25%	13053.4	30.29%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.800e-05	1.0000	1880.0	28.36%	13130.0	30.47%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-7.200e-05	1.0000	3009.0	45.38%	20556.8	47.71%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.800e-05	1.0000	851.0	12.84%	6254.4	14.51%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.300e-05	1.0000	3649.0	55.04%	24758.1	57.46%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.800e-05	1.0000	2214.0	33.39%	15402.5	35.75%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.300e-05	1.0000	584.0	8.81%	4433.9	10.29%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.600e-05	1.0000	627.0	9.46%	4747.5	11.02%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-7.000e-06	1.0000	472.0	7.12%	3693.8	8.57%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-6.000e-06	1.0000	1420.0	21.42%	10199.2	23.67%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-5.000e-06	1.0000	3310.0	49.92%	22677.3	52.63%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.000e-06	1.0000	3516.0	53.03%	24051.5	55.82%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.000e-06	1.0000	397.0	5.99%	3195.1	7.42%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.000e-06	1.0000	59.0	0.89%	657.5	1.53%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.000e-06	1.0000	1887.0	28.46%	13448.6	31.21%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	1824.0	27.51%	13040.5	30.26%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-0.000e+00	1.0000	70.0	1.06%	792.5	1.84%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	90.0	1.36%	960.1	2.23%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-0.000e+00	1.0000	43.0	0.65%	563.5	1.31%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	328.0	4.95%	2824.8	6.56%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	5112.0	77.10%	34443.0	79.93%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	152.0	2.29%	1510.6	3.51%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	100.0	1.51%	1090.1	2.53%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	164.0	2.47%	1608.7	3.73%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-0.000e+00	1.0000	129.0	1.95%	1352.3	3.14%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	53.0	0.80%	709.5	1.65%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-0.000e+00	1.0000	695.0	10.48%	5570.9	12.93%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-0.000e+00	1.0000	1669.0	25.17%	12297.1	28.54%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	129.0	1.95%	1392.1	3.23%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	5229.0	78.87%	35350.1	82.04%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-0.000e+00	1.0000	2711.0	40.89%	19390.9	45.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	215.0	3.24%	2163.6	5.02%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	4261.0	64.27%	29487.4	68.43%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-0.000e+00	1.0000	103.0	1.55%	1285.6	2.98%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	3179.0	47.95%	23238.9	53.93%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	2237.0	33.74%	17217.5	39.96%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	3436.0	51.83%	24573.2	57.03%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	373.0	5.63%	6520.7	15.13%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	1092.0	16.47%	14286.8	33.16%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	652.0	9.83%	9897.8	22.97%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	311.0	4.69%	5768.0	13.39%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	1498.0	22.59%	13151.0	30.52%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	0.000e+00	1.0000	1253.0	18.90%	10205.7	23.69%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	1108.0	16.71%	9616.2	22.32%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	80.0	1.21%	1558.0	3.62%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	2042.0	30.80%	17401.1	40.38%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	873.0	13.17%	9625.9	22.34%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	1962.0	29.59%	18245.0	42.34%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	983.0	14.83%	9426.2	21.88%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	1815.0	27.38%	16516.2	38.33%