Information for 1-NCNTGCCAAG (Motif 1)

A G T C A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G
Reverse Opposite:
A G T C A G C T A C G T A C T G A T C G G T A C G C T A T C A G T A C G T C A G
p-value:1e-256
log p-value:-5.914e+02
Information Content per bp:1.619
Number of Target Sequences with motif1625.0
Percentage of Target Sequences with motif49.54%
Number of Background Sequences with motif9812.9
Percentage of Background Sequences with motif22.21%
Average Position of motif in Targets100.3 +/- 52.4bp
Average Position of motif in Background99.9 +/- 73.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.37
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.97
Offset:1
Orientation:forward strand
Alignment:NCNTGCCAAG
-CGTGCCAAG
 A G T C A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.95
Offset:2
Orientation:forward strand
Alignment:NCNTGCCAAG
--TTGCCAAG
 A G T C A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.93
Offset:1
Orientation:forward strand
Alignment:NCNTGCCAAG-
-GGTGCCAAGT
 A G T C A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:NCNTGCCAAG--
-NNTGCCAAGNN
 A G T C A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G A C G T A C G T
A C G T G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.83
Offset:2
Orientation:forward strand
Alignment:NCNTGCCAAG-
--ATGCCAACC
 A G T C A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G A C G T
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.83
Offset:3
Orientation:forward strand
Alignment:NCNTGCCAAG-
---TGCCAGCB
 A G T C A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G A C G T
A C G T A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-NCNTGCCAAG-----
ACTATGCCAACCTACC
 A C G T A G T C A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.73
Offset:3
Orientation:forward strand
Alignment:NCNTGCCAAG-
---TGTCANYT
 A G T C A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G A C G T
A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.73
Offset:2
Orientation:forward strand
Alignment:NCNTGCCAAG-
--ATGCCCACC
 A G T C A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G A C G T
A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:NCNTGCCAAG
-RHTGWCAR-
 A G T C A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G
A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T