Information for 20-GTGAATTTCAAA (Motif 17)

A T C G A C G T A T C G C G T A T G C A A G C T A C G T C G A T G A T C C G T A T G C A C T G A
Reverse Opposite:
G A C T A C G T C G A T C T A G G C T A T G C A T C G A A C G T G C A T A T G C G T C A T A G C
p-value:1e-14
log p-value:-3.291e+01
Information Content per bp:1.712
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif339.1
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets100.1 +/- 55.1bp
Average Position of motif in Background94.8 +/- 64.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GTGAATTTCAAA
--CGGTTTCAAA
 A T C G A C G T A T C G C G T A T G C A A G C T A C G T C G A T G A T C C G T A T G C A C T G A
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GTGAATTTCAAA--
----ACATCAAAGG
 A T C G A C G T A T C G C G T A T G C A A G C T A C G T C G A T G A T C C G T A T G C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GTGAATTTCAAA-
----NATTCAAAT
 A T C G A C G T A T C G C G T A T G C A A G C T A C G T C G A T G A T C C G T A T G C A C T G A A C G T
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GTGAATTTCAAA--
----ASATCAAAGG
 A T C G A C G T A T C G C G T A T G C A A G C T A C G T C G A T G A T C C G T A T G C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A T C G G C T A G C A T T A G C C G T A T C G A C T G A T C A G T A C G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GTGAATTTCAAA--
----ACWTCAAAGG
 A T C G A C G T A T C G C G T A T G C A A G C T A C G T C G A T G A T C C G T A T G C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GTGAATTTCAAA----
--AAAGATCAAAGGAA
 A T C G A C G T A T C G C G T A T G C A A G C T A C G T C G A T G A T C C G T A T G C A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTGAATTTCAAA
GGGAATTTCC--
 A T C G A C G T A T C G C G T A T G C A A G C T A C G T C G A T G A T C C G T A T G C A C T G A
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTGAATTTCAAA-
GGACTGAATTCATGCC
 A C G T A C G T A C G T A T C G A C G T A T C G C G T A T G C A A G C T A C G T C G A T G A T C C G T A T G C A C T G A A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

FOXH1/MA0479.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTGAATTTCAAA
TGTGGATTNNN--
 A C G T A T C G A C G T A T C G C G T A T G C A A G C T A C G T C G A T G A T C C G T A T G C A C T G A
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A A C G T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGAATTTCAAA------
-TATAGATCAAAGGAAAA
 A T C G A C G T A T C G C G T A T G C A A G C T A C G T C G A T G A T C C G T A T G C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A