Information for 20-CGTGAAAG (Motif 18)

A G T C C T A G C A G T A C T G G C T A C G T A C G T A A C T G
Reverse Opposite:
G T A C C G A T A C G T C G A T A G T C G T C A A G T C T C A G
p-value:1e-13
log p-value:-3.156e+01
Information Content per bp:1.826
Number of Target Sequences with motif272.0
Percentage of Target Sequences with motif8.29%
Number of Background Sequences with motif2264.7
Percentage of Background Sequences with motif5.13%
Average Position of motif in Targets96.8 +/- 57.9bp
Average Position of motif in Background100.9 +/- 67.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1/MA0508.2/Jaspar

Match Rank:1
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:CGTGAAAG---
-GTGAAAGTGA
 A G T C C T A G C A G T A C T G G C T A C G T A C G T A A C T G A C G T A C G T A C G T
A C G T C T A G C G A T A C T G C G T A G C T A G T C A C T A G A G C T C T A G C G T A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---CGTGAAAG-
GAAAGTGAAAGT
 A C G T A C G T A C G T A G T C C T A G C A G T A C T G G C T A C G T A C G T A A C T G A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGTGAAAG--
ACTGAAACCA
 A G T C C T A G C A G T A C T G G C T A C G T A C G T A A C T G A C G T A C G T
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CGTGAAAG-
ASATCAAAGG
 A C G T A G T C C T A G C A G T A C T G G C T A C G T A C G T A A C T G A C G T
C T G A A T C G G C T A G C A T T A G C C G T A T C G A C T G A T C A G T A C G

TCF7L2/MA0523.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGTGAAAG---
AAAGATCAAAGGAA
 A C G T A C G T A C G T A G T C C T A G C A G T A C T G G C T A C G T A C G T A A C T G A C G T A C G T A C G T
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGTGAAAG-
GAAAGTGAAAGT
 A C G T A C G T A C G T A G T C C T A G C A G T A C T G G C T A C G T A C G T A A C T G A C G T
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGTGAAAG
GGCMATGAAA-
 A C G T A C G T A C G T A G T C C T A G C A G T A C T G G C T A C G T A C G T A A C T G
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:8
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGTGAAAG-
GGAAGTGAAAST
 A C G T A C G T A C G T A G T C C T A G C A G T A C T G G C T A C G T A C G T A A C T G A C G T
C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CGTGAAAG-----
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A G T C C T A G C A G T A C T G G C T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGAAAG-
NNTNTCATGAATGT
 A C G T A C G T A C G T A C G T A C G T A G T C C T A G C A G T A C T G G C T A C G T A C G T A A C T G A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T