Information for 21-TCACGTTTCA (Motif 19)

C A G T A G T C C G T A G A T C A C T G A C G T A C G T A G C T A T G C G C T A
Reverse Opposite:
C A G T A T C G C T G A G T C A T C G A A G T C C T A G A C G T C T A G G T C A
p-value:1e-12
log p-value:-2.928e+01
Information Content per bp:1.853
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif73.9
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets109.2 +/- 50.6bp
Average Position of motif in Background98.8 +/- 52.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SIX2/MA1119.1/Jaspar

Match Rank:1
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---TCACGTTTCA---
GTATCAGGTTTCAGNN
 A C G T A C G T A C G T C A G T A G T C C G T A G A T C A C T G A C G T A C G T A G C T A T G C G C T A A C G T A C G T A C G T
C T A G C A G T T G C A G C A T G A T C C G T A C A T G C T A G G A C T C A G T C G A T G T A C G C T A A C T G C G A T C G A T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---TCACGTTTCA
GKVTCADRTTWC-
 A C G T A C G T A C G T C A G T A G T C C G T A G A T C A C T G A C G T A C G T A G C T A T G C G C T A
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

SIX1/MA1118.1/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TCACGTTTCA
TATCAGGTTAC-
 A C G T A C G T C A G T A G T C C G T A G A T C A C T G A C G T A C G T A G C T A T G C G C T A
C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C A C G T

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----TCACGTTTCA
VGGTVTCAGRTTWCA
 A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A G A T C A C T G A C G T A C G T A G C T A T G C G C T A
T A G C T C A G T C A G C A G T T C A G A C G T A G T C T C G A C T A G C T A G A C G T A C G T C G A T G T A C G T C A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:5
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TCACGTTTCA
GKMTCADRTTWC-
 A C G T A C G T A C G T C A G T A G T C C G T A G A T C A C T G A C G T A C G T A G C T A T G C G C T A
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T

Hes2/MA0616.1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TCACGTTTCA---
GCACGTGTCNNNN
 C A G T A G T C C G T A G A T C A C T G A C G T A C G T A G C T A T G C G C T A A C G T A C G T A C G T
A C T G A G T C C G T A A G T C A C T G A G C T A C T G A G C T A T G C A C T G C G A T C G A T C G T A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TCACGTTTCA--
--TGGTTTCAGT
 C A G T A G T C C G T A G A T C A C T G A C G T A C G T A G C T A T G C G C T A A C G T A C G T
A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

Pax6/MA0069.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCACGTTTCA---
TTCACGCATGAGTT
 A C G T C A G T A G T C C G T A G A T C A C T G A C G T A C G T A G C T A T G C G C T A A C G T A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCACGTTTCA
GCACGTAY--
 C A G T A G T C C G T A G A T C A C T G A C G T A C G T A G C T A T G C G C T A
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCACGTTTCA
GCACGTACCC
 C A G T A G T C C G T A G A T C A C T G A C G T A C G T A G C T A T G C G C T A
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C