Information for 23-CTCCCTCCTGGG (Motif 25)

A G T C A C G T A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G C G T A A C T G
p-value:1e-9
log p-value:-2.201e+01
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets154.3 +/- 36.2bp
Average Position of motif in Background84.3 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTCCCTCCTGGG
CCCCCTGCTGTG
 A G T C A C G T A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G A C T G A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTCCCTCCTGGG-
GGCCYCCTGCTGDGH
 A C G T A C G T A G T C A C G T A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G A C T G A C T G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

E2F6/MA0471.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CTCCCTCCTGGG
NCTTCCCGCCC---
 A C G T A C G T A G T C A C G T A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G A C T G A C T G
A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C A C G T A C G T A C G T

GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTCCCTCCTGGG---
NGGCCTCCCAGGGAG
 A G T C A C G T A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G A C T G A C T G A C G T A C G T A C G T
G C T A A C T G T C A G G A T C A G T C G A C T A G T C G T A C G A T C C T G A T A C G C T A G T C A G C G T A A T C G

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTCCCTCCTGGG---
TCNCCTGCTGNGNNN
 A G T C A C G T A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G A C T G A C T G A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTCCCTCCTGGG---
TNTCCTGCTGTGNNG
 A G T C A C G T A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G A C T G A C T G A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0102.1_Zic2_1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTCCCTCCTGGG----
-CCCCCCCGGGGGGGT
 A G T C A C G T A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTCCCTCCTGGG---
-CCCCCCCGGGGGNN
 A G T C A C G T A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G A C T G A C T G A C G T A C G T A C G T
A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTCCCTCCTGGG----
-CCCCCCCGGGGGGGT
 A G T C A C G T A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTCCCTCCTGGG
GACCCCCCGCTGTG
 A C G T A C G T A G T C A C G T A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G A C T G A C T G
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G