Information for 5-VVKTGGCTCC (Motif 3)

T C G A T A C G A C G T G C A T T C A G T A C G T A G C C A G T G A T C A G T C
Reverse Opposite:
T C A G C T A G G T C A A T C G A T G C A G T C C G T A T G C A A T G C A G C T
p-value:1e-41
log p-value:-9.541e+01
Information Content per bp:1.472
Number of Target Sequences with motif1282.0
Percentage of Target Sequences with motif39.09%
Number of Background Sequences with motif12408.2
Percentage of Background Sequences with motif28.08%
Average Position of motif in Targets98.9 +/- 55.4bp
Average Position of motif in Background100.3 +/- 69.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.78
Offset:5
Orientation:forward strand
Alignment:VVKTGGCTCC-
-----GCTCCG
 T C G A T A C G A C G T G C A T T C A G T A C G T A G C C A G T G A T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

PB0203.1_Zfp691_2/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-VVKTGGCTCC------
TACGAGACTCCTCTAAC
 A C G T T C G A T A C G A C G T G C A T T C A G T A C G T A G C C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

PB0113.1_E2F3_2/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--VVKTGGCTCC-----
NNNNTTGGCGCCGANNN
 A C G T A C G T T C G A T A C G A C G T G C A T T C A G T A C G T A G C C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--VVKTGGCTCC-----
NNNNTTGGCGCCGANNN
 A C G T A C G T T C G A T A C G A C G T G C A T T C A G T A C G T A G C C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:VVKTGGCTCC------
----GGCTCYAKCAYC
 T C G A T A C G A C G T G C A T T C A G T A C G T A G C C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

E2F1/MA0024.3/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:VVKTGGCTCC---
-TTTGGCGCCAAA
 T C G A T A C G A C G T G C A T T C A G T A C G T A G C C A G T G A T C A G T C A C G T A C G T A C G T
A C G T G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:VVKTGGCTCC
----NGCTN-
 T C G A T A C G A C G T G C A T T C A G T A C G T A G C C A G T G A T C A G T C
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:VVKTGGCTCC--
--TWVGGTCCGC
 T C G A T A C G A C G T G C A T T C A G T A C G T A G C C A G T G A T C A G T C A C G T A C G T
A C G T A C G T A G C T C G A T T A C G A T C G A T C G C A G T A G T C A G T C A C T G T A G C

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:VVKTGGCTCC--
--TTVACACCTH
 T C G A T A C G A C G T G C A T T C A G T A C G T A G C C A G T G A T C A G T C A C G T A C G T
A C G T A C G T A C G T G A C T T C A G C T G A G T A C C T G A T A G C A G T C G A C T G A T C

WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:VVKTGGCTCC-------
-----MCTCCCMCRCAB
 T C G A T A C G A C G T G C A T T C A G T A C G T A G C C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C G A T C C A G T A G T C A G T C A G T C T G C A G A T C C T G A A T G C G T C A A C G T