Information for 10-CCAGACAG (Motif 6)

A T G C A G T C G T C A T A C G G T C A A T G C C G T A A C T G
Reverse Opposite:
T G A C G C A T A T C G A C G T A T G C A C G T C T A G T A C G
p-value:1e-195
log p-value:-4.510e+02
Information Content per bp:1.843
Number of Target Sequences with motif4022.0
Percentage of Target Sequences with motif27.98%
Number of Background Sequences with motif6247.5
Percentage of Background Sequences with motif17.83%
Average Position of motif in Targets100.2 +/- 54.6bp
Average Position of motif in Background100.1 +/- 66.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:CCAGACAG
CCAGACAG
 A T G C A G T C G T C A T A C G G T C A A T G C C G T A A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.93
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACAG----
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T C A T A C G G T C A A T G C C G T A A C T G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:CCAGACAG--
CCAGACRSVB
 A T G C A G T C G T C A T A C G G T C A A T G C C G T A A C T G A C G T A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad4/MA1153.1/Jaspar

Match Rank:4
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-CCAGACAG
TCTAGACA-
 A C G T A T G C A G T C G T C A T A C G G T C A A T G C C G T A A C T G
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CCAGACAG
BCAGACWA
 A T G C A G T C G T C A T A C G G T C A A T G C C G T A A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACAG
ATGCCAGACN-
 A C G T A C G T A C G T A T G C A G T C G T C A T A C G G T C A A T G C C G T A A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:7
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CCAGACAG--
RHHCAGAGAGGB
 A C G T A C G T A T G C A G T C G T C A T A C G G T C A A T G C C G T A A C T G A C G T A C G T
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CCAGACAG
AGGTGNCAGACAG
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T C A T A C G G T C A A T G C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACAG
AGGTGHCAGACA-
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T C A T A C G G T C A A T G C C G T A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:10
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCAGACAG
CGTCTAGACA-
 A C G T A C G T A C G T A T G C A G T C G T C A T A C G G T C A A T G C C G T A A C T G
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T