Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 14376)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 35029)	% of Background Sequences with Motif
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2111	-4.862e+03	0.0000	4852.0	33.75%	2199.8	6.28%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2063	-4.751e+03	0.0000	4395.0	30.57%	1789.4	5.11%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2029	-4.673e+03	0.0000	4803.0	33.41%	2247.6	6.42%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-1930	-4.446e+03	0.0000	4328.0	30.11%	1869.7	5.34%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1929	-4.444e+03	0.0000	4950.0	34.43%	2542.4	7.26%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-1887	-4.345e+03	0.0000	3981.0	27.69%	1577.4	4.50%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-1589	-3.660e+03	0.0000	3153.0	21.93%	1121.8	3.20%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1318	-3.035e+03	0.0000	2472.0	17.20%	796.6	2.27%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-646	-1.488e+03	0.0000	1556.0	10.82%	666.3	1.90%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-326	-7.511e+02	0.0000	961.0	6.68%	501.6	1.43%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-263	-6.061e+02	0.0000	2481.0	17.26%	2890.2	8.25%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-250	-5.762e+02	0.0000	4502.0	31.32%	6809.1	19.44%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-224	-5.168e+02	0.0000	2307.0	16.05%	2777.9	7.93%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-212	-4.892e+02	0.0000	1486.0	10.34%	1471.5	4.20%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-211	-4.872e+02	0.0000	3051.0	21.22%	4211.9	12.02%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-204	-4.707e+02	0.0000	1111.0	7.73%	943.8	2.69%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-199	-4.595e+02	0.0000	1175.0	8.17%	1049.4	3.00%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-195	-4.497e+02	0.0000	2296.0	15.97%	2912.1	8.31%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-188	-4.331e+02	0.0000	2623.0	18.25%	3554.8	10.15%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-167	-3.866e+02	0.0000	6665.0	46.36%	12308.5	35.14%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-163	-3.775e+02	0.0000	1729.0	12.03%	2081.1	5.94%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-147	-3.399e+02	0.0000	3984.0	27.71%	6593.7	18.82%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-143	-3.300e+02	0.0000	1188.0	8.26%	1274.2	3.64%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-130	-3.013e+02	0.0000	978.0	6.80%	993.6	2.84%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-122	-2.817e+02	0.0000	411.0	2.86%	240.6	0.69%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-114	-2.643e+02	0.0000	3869.0	26.91%	6687.0	19.09%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-113	-2.606e+02	0.0000	2530.0	17.60%	3926.7	11.21%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-106	-2.460e+02	0.0000	370.0	2.57%	222.4	0.63%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-106	-2.457e+02	0.0000	2229.0	15.51%	3385.8	9.67%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-102	-2.371e+02	0.0000	1621.0	11.28%	2249.1	6.42%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-97	-2.255e+02	0.0000	344.0	2.39%	209.5	0.60%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-97	-2.238e+02	0.0000	298.0	2.07%	160.6	0.46%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-93	-2.157e+02	0.0000	398.0	2.77%	282.8	0.81%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-90	-2.076e+02	0.0000	1965.0	13.67%	3007.6	8.59%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-84	-1.940e+02	0.0000	1446.0	10.06%	2056.9	5.87%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-79	-1.834e+02	0.0000	2283.0	15.88%	3744.6	10.69%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-75	-1.743e+02	0.0000	1105.0	7.69%	1486.9	4.24%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-74	-1.727e+02	0.0000	1907.0	13.27%	3030.9	8.65%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-68	-1.583e+02	0.0000	3646.0	25.36%	6782.7	19.36%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-67	-1.546e+02	0.0000	1237.0	8.60%	1792.3	5.12%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-66	-1.542e+02	0.0000	1548.0	10.77%	2394.0	6.83%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-66	-1.533e+02	0.0000	2268.0	15.78%	3855.8	11.01%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-66	-1.525e+02	0.0000	526.0	3.66%	548.9	1.57%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-64	-1.493e+02	0.0000	2810.0	19.55%	5020.8	14.33%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-64	-1.480e+02	0.0000	715.0	4.97%	867.4	2.48%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-63	-1.465e+02	0.0000	1413.0	9.83%	2159.3	6.16%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-63	-1.458e+02	0.0000	607.0	4.22%	691.4	1.97%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-62	-1.450e+02	0.0000	2037.0	14.17%	3418.6	9.76%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-62	-1.434e+02	0.0000	755.0	5.25%	947.6	2.71%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-61	-1.408e+02	0.0000	391.0	2.72%	363.6	1.04%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-60	-1.403e+02	0.0000	1617.0	11.25%	2587.1	7.39%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-58	-1.356e+02	0.0000	1190.0	8.28%	1769.9	5.05%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-58	-1.349e+02	0.0000	1495.0	10.40%	2367.4	6.76%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-56	-1.310e+02	0.0000	1260.0	8.76%	1921.1	5.48%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-55	-1.281e+02	0.0000	1983.0	13.79%	3391.9	9.68%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-54	-1.261e+02	0.0000	2156.0	15.00%	3763.6	10.74%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-54	-1.248e+02	0.0000	1743.0	12.12%	2913.2	8.32%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-53	-1.229e+02	0.0000	1648.0	11.46%	2728.8	7.79%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-52	-1.216e+02	0.0000	1835.0	12.76%	3118.3	8.90%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-51	-1.190e+02	0.0000	304.0	2.11%	269.6	0.77%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-51	-1.185e+02	0.0000	1836.0	12.77%	3136.0	8.95%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-49	-1.130e+02	0.0000	1664.0	11.57%	2809.1	8.02%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-47	-1.102e+02	0.0000	1305.0	9.08%	2095.9	5.98%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-45	-1.051e+02	0.0000	669.0	4.65%	898.2	2.56%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-44	-1.025e+02	0.0000	842.0	5.86%	1225.3	3.50%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-43	-9.905e+01	0.0000	1730.0	12.03%	3020.5	8.62%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-42	-9.899e+01	0.0000	1095.0	7.62%	1727.9	4.93%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-42	-9.864e+01	0.0000	1434.0	9.97%	2410.8	6.88%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-42	-9.841e+01	0.0000	2899.0	20.17%	5544.5	15.83%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-42	-9.816e+01	0.0000	2323.0	16.16%	4287.5	12.24%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-42	-9.764e+01	0.0000	1054.0	7.33%	1653.0	4.72%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-41	-9.483e+01	0.0000	2351.0	16.35%	4370.3	12.48%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-40	-9.303e+01	0.0000	2026.0	14.09%	3682.3	10.51%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-38	-8.865e+01	0.0000	2975.0	20.69%	5788.7	16.52%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-37	-8.568e+01	0.0000	792.0	5.51%	1191.9	3.40%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-35	-8.149e+01	0.0000	4134.0	28.76%	8478.4	24.20%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-34	-7.983e+01	0.0000	1458.0	10.14%	2561.6	7.31%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-33	-7.750e+01	0.0000	1360.0	9.46%	2370.9	6.77%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-33	-7.659e+01	0.0000	3223.0	22.42%	6447.5	18.41%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-33	-7.609e+01	0.0000	3155.0	21.95%	6298.0	17.98%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-32	-7.534e+01	0.0000	3029.0	21.07%	6021.0	17.19%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-32	-7.533e+01	0.0000	1114.0	7.75%	1875.6	5.35%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-32	-7.490e+01	0.0000	1211.0	8.42%	2076.8	5.93%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-30	-7.115e+01	0.0000	1429.0	9.94%	2552.3	7.29%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-27	-6.388e+01	0.0000	6036.0	41.99%	13140.0	37.51%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-27	-6.334e+01	0.0000	8139.0	56.62%	18235.1	52.06%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-26	-6.106e+01	0.0000	709.0	4.93%	1130.3	3.23%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-26	-6.087e+01	0.0000	1943.0	13.52%	3731.1	10.65%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-24	-5.739e+01	0.0000	1790.0	12.45%	3424.7	9.78%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-24	-5.727e+01	0.0000	595.0	4.14%	923.4	2.64%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-24	-5.713e+01	0.0000	693.0	4.82%	1116.8	3.19%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-23	-5.464e+01	0.0000	427.0	2.97%	613.7	1.75%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-23	-5.348e+01	0.0000	311.0	2.16%	406.5	1.16%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-23	-5.348e+01	0.0000	311.0	2.16%	406.5	1.16%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-21	-5.039e+01	0.0000	2833.0	19.71%	5821.5	16.62%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-21	-4.919e+01	0.0000	1454.0	10.11%	2757.3	7.87%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-20	-4.740e+01	0.0000	1883.0	13.10%	3714.4	10.60%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-20	-4.732e+01	0.0000	2388.0	16.61%	4845.3	13.83%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-20	-4.699e+01	0.0000	1629.0	11.33%	3157.9	9.01%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-20	-4.670e+01	0.0000	3496.0	24.32%	7386.5	21.09%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-20	-4.663e+01	0.0000	1752.0	12.19%	3431.0	9.79%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-20	-4.649e+01	0.0000	3776.0	26.27%	8038.0	22.95%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-19	-4.470e+01	0.0000	3836.0	26.68%	8201.2	23.41%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-19	-4.423e+01	0.0000	3051.0	21.22%	6390.4	18.24%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-18	-4.368e+01	0.0000	432.0	3.01%	663.4	1.89%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-18	-4.256e+01	0.0000	210.0	1.46%	259.6	0.74%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-17	-4.042e+01	0.0000	940.0	6.54%	1718.4	4.91%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-17	-3.993e+01	0.0000	1117.0	7.77%	2100.2	6.00%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-16	-3.738e+01	0.0000	469.0	3.26%	763.2	2.18%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-15	-3.597e+01	0.0000	709.0	4.93%	1261.2	3.60%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-15	-3.545e+01	0.0000	1652.0	11.49%	3316.0	9.47%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-14	-3.361e+01	0.0000	496.0	3.45%	836.5	2.39%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-14	-3.309e+01	0.0000	816.0	5.68%	1506.3	4.30%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-14	-3.306e+01	0.0000	3648.0	25.38%	7928.0	22.63%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-14	-3.305e+01	0.0000	377.0	2.62%	601.1	1.72%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-13	-3.219e+01	0.0000	3538.0	24.61%	7683.7	21.93%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-13	-3.083e+01	0.0000	880.0	6.12%	1660.8	4.74%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-13	-3.037e+01	0.0000	2122.0	14.76%	4434.8	12.66%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-13	-3.018e+01	0.0000	2404.0	16.72%	5082.9	14.51%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-12	-2.968e+01	0.0000	892.0	6.20%	1695.8	4.84%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-12	-2.961e+01	0.0000	983.0	6.84%	1893.1	5.40%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-12	-2.944e+01	0.0000	238.0	1.66%	348.7	1.00%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-12	-2.899e+01	0.0000	930.0	6.47%	1783.5	5.09%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-12	-2.877e+01	0.0000	871.0	6.06%	1657.8	4.73%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-12	-2.862e+01	0.0000	280.0	1.95%	431.4	1.23%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-11	-2.745e+01	0.0000	2201.0	15.31%	4654.0	13.29%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-11	-2.648e+01	0.0000	921.0	6.41%	1785.3	5.10%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-11	-2.629e+01	0.0000	2823.0	19.64%	6107.7	17.44%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-11	-2.568e+01	0.0000	291.0	2.02%	465.7	1.33%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-10	-2.505e+01	0.0000	5486.0	38.16%	12430.7	35.49%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-10	-2.504e+01	0.0000	397.0	2.76%	681.0	1.94%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-10	-2.488e+01	0.0000	743.0	5.17%	1412.0	4.03%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-10	-2.476e+01	0.0000	949.0	6.60%	1862.4	5.32%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-10	-2.394e+01	0.0000	226.0	1.57%	346.9	0.99%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-10	-2.353e+01	0.0000	1942.0	13.51%	4113.2	11.74%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-10	-2.335e+01	0.0000	1861.0	12.95%	3930.3	11.22%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-9	-2.269e+01	0.0000	370.0	2.57%	639.9	1.83%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-9	-2.219e+01	0.0000	119.0	0.83%	154.1	0.44%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-9	-2.142e+01	0.0000	1093.0	7.60%	2215.4	6.32%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-8	-2.037e+01	0.0000	2117.0	14.73%	4563.9	13.03%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-8	-1.997e+01	0.0000	175.0	1.22%	264.5	0.76%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-8	-1.985e+01	0.0000	211.0	1.47%	334.4	0.95%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-8	-1.984e+01	0.0000	324.0	2.25%	561.6	1.60%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-8	-1.975e+01	0.0000	1533.0	10.66%	3230.7	9.22%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-8	-1.948e+01	0.0000	301.0	2.09%	516.3	1.47%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-8	-1.914e+01	0.0000	193.0	1.34%	302.4	0.86%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-8	-1.901e+01	0.0000	1493.0	10.39%	3149.2	8.99%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-8	-1.881e+01	0.0000	406.0	2.82%	738.7	2.11%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-8	-1.868e+01	0.0000	963.0	6.70%	1955.9	5.58%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-8	-1.856e+01	0.0000	1748.0	12.16%	3740.3	10.68%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-7	-1.816e+01	0.0000	1754.0	12.20%	3760.2	10.73%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-7	-1.767e+01	0.0000	1946.0	13.54%	4211.1	12.02%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-7	-1.734e+01	0.0000	1507.0	10.48%	3205.0	9.15%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-7	-1.731e+01	0.0000	1694.0	11.78%	3635.8	10.38%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-7	-1.719e+01	0.0000	1496.0	10.41%	3182.9	9.09%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-7	-1.713e+01	0.0000	769.0	5.35%	1540.4	4.40%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-7	-1.693e+01	0.0000	1727.0	12.01%	3718.0	10.61%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-6	-1.603e+01	0.0000	788.0	5.48%	1594.2	4.55%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-6	-1.586e+01	0.0000	2466.0	17.15%	5455.8	15.57%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-6	-1.582e+01	0.0000	197.0	1.37%	325.3	0.93%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-6	-1.579e+01	0.0000	377.0	2.62%	698.6	1.99%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-6	-1.564e+01	0.0000	154.0	1.07%	241.2	0.69%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-6	-1.536e+01	0.0000	555.0	3.86%	1086.3	3.10%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-6	-1.500e+01	0.0000	2103.0	14.63%	4623.8	13.20%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-6	-1.420e+01	0.0000	2621.0	18.23%	5853.3	16.71%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-6	-1.415e+01	0.0000	407.0	2.83%	775.1	2.21%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-6	-1.395e+01	0.0000	3625.0	25.22%	8235.2	23.51%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-5	-1.379e+01	0.0000	1138.0	7.92%	2413.9	6.89%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-5	-1.351e+01	0.0000	307.0	2.14%	566.4	1.62%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-5	-1.285e+01	0.0000	1472.0	10.24%	3196.8	9.13%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-5	-1.282e+01	0.0000	6650.0	46.26%	15542.8	44.37%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-5	-1.203e+01	0.0000	2055.0	14.29%	4571.0	13.05%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-5	-1.202e+01	0.0000	874.0	6.08%	1837.5	5.25%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-5	-1.159e+01	0.0000	2896.0	20.14%	6563.7	18.74%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-4	-1.140e+01	0.0000	1475.0	10.26%	3229.7	9.22%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-1.115e+01	0.0000	338.0	2.35%	651.9	1.86%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-4	-1.099e+01	0.0000	2272.0	15.80%	5103.5	14.57%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-4	-1.086e+01	0.0000	557.0	3.87%	1137.5	3.25%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-4	-1.078e+01	0.0000	725.0	5.04%	1516.4	4.33%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-4	-1.025e+01	0.0001	2011.0	13.99%	4506.9	12.87%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-4	-1.019e+01	0.0001	1207.0	8.40%	2630.3	7.51%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-4	-9.947e+00	0.0001	852.0	5.93%	1817.8	5.19%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-4	-9.916e+00	0.0001	118.0	0.82%	196.8	0.56%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-4	-9.861e+00	0.0001	361.0	2.51%	713.1	2.04%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-4	-9.800e+00	0.0001	2041.0	14.20%	4587.7	13.10%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-4	-9.655e+00	0.0001	766.0	5.33%	1625.4	4.64%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-4	-9.344e+00	0.0002	5419.0	37.69%	12675.9	36.19%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-3	-8.989e+00	0.0003	565.0	3.93%	1178.1	3.36%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-3	-8.981e+00	0.0003	3415.0	23.75%	7871.3	22.47%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-3	-8.877e+00	0.0003	631.0	4.39%	1329.3	3.79%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-3	-8.866e+00	0.0003	169.0	1.18%	308.0	0.88%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-3	-8.609e+00	0.0004	817.0	5.68%	1758.8	5.02%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-3	-8.595e+00	0.0004	2614.0	18.18%	5974.9	17.06%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-3	-8.265e+00	0.0006	159.0	1.11%	290.2	0.83%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-3	-7.784e+00	0.0009	23.0	0.16%	25.4	0.07%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-7.773e+00	0.0009	2372.0	16.50%	5423.9	15.48%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-3	-7.722e+00	0.0010	1664.0	11.57%	3750.9	10.71%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-3	-7.671e+00	0.0010	258.0	1.79%	508.6	1.45%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-3	-7.671e+00	0.0010	158.0	1.10%	292.0	0.83%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-3	-7.528e+00	0.0012	305.0	2.12%	613.0	1.75%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-7.015e+00	0.0019	2747.0	19.11%	6339.3	18.10%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-6.793e+00	0.0024	889.0	6.18%	1957.9	5.59%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-2	-6.456e+00	0.0033	1486.0	10.34%	3363.9	9.60%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-2	-6.293e+00	0.0039	302.0	2.10%	620.5	1.77%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-6.239e+00	0.0041	692.0	4.81%	1511.6	4.32%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-6.228e+00	0.0041	94.0	0.65%	167.3	0.48%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-2	-5.770e+00	0.0065	1659.0	11.54%	3791.2	10.82%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-5.713e+00	0.0068	484.0	3.37%	1041.6	2.97%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-2	-5.537e+00	0.0081	358.0	2.49%	756.1	2.16%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-5.223e+00	0.0110	467.0	3.25%	1010.0	2.88%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-2	-5.032e+00	0.0132	582.0	4.05%	1279.5	3.65%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-2	-4.943e+00	0.0144	36.0	0.25%	56.2	0.16%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-2	-4.742e+00	0.0175	4018.0	27.95%	9481.0	27.07%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-4.664e+00	0.0189	1114.0	7.75%	2534.9	7.24%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-4.478e+00	0.0226	267.0	1.86%	564.2	1.61%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-4.322e+00	0.0263	1425.0	9.91%	3281.8	9.37%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-1	-4.289e+00	0.0271	1123.0	7.81%	2566.7	7.33%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-4.206e+00	0.0293	21.0	0.15%	30.2	0.09%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-1	-4.104e+00	0.0323	2462.0	17.13%	5766.6	16.46%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-4.073e+00	0.0331	1342.0	9.34%	3092.4	8.83%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.592e+00	0.0534	342.0	2.38%	750.2	2.14%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-3.536e+00	0.0562	28.0	0.19%	46.2	0.13%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.510e+00	0.0574	609.0	4.24%	1375.5	3.93%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-3.172e+00	0.0801	103.0	0.72%	210.9	0.60%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-3.087e+00	0.0868	10.0	0.07%	13.1	0.04%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-3.054e+00	0.0893	46.0	0.32%	86.8	0.25%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-2.971e+00	0.0966	170.0	1.18%	364.6	1.04%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.904e+00	0.1029	455.0	3.16%	1029.0	2.94%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-1	-2.877e+00	0.1052	738.0	5.13%	1697.0	4.84%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-2.728e+00	0.1216	158.0	1.10%	340.0	0.97%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.723e+00	0.1217	115.0	0.80%	242.7	0.69%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.701e+00	0.1238	599.0	4.17%	1373.5	3.92%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-2.674e+00	0.1267	77.0	0.54%	157.2	0.45%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.646e+00	0.1297	403.0	2.80%	912.2	2.60%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.594e+00	0.1361	148.0	1.03%	319.0	0.91%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.555e+00	0.1409	617.0	4.29%	1420.3	4.05%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.540e+00	0.1425	103.0	0.72%	217.9	0.62%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-2.489e+00	0.1492	625.0	4.35%	1441.2	4.11%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.480e+00	0.1499	188.0	1.31%	413.8	1.18%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-1	-2.387e+00	0.1639	164.0	1.14%	359.8	1.03%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.293e+00	0.1793	669.0	4.65%	1552.2	4.43%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.125e+00	0.2113	4692.0	32.64%	11272.0	32.18%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.080e+00	0.2201	827.0	5.75%	1937.1	5.53%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-2.062e+00	0.2230	56.0	0.39%	116.0	0.33%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.006e+00	0.2351	333.0	2.32%	763.3	2.18%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.000e+00	0.2355	180.0	1.25%	403.8	1.15%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.882e+00	0.2640	4.0	0.03%	5.5	0.02%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.822e+00	0.2790	190.0	1.32%	430.1	1.23%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.689e+00	0.3175	438.0	3.05%	1022.5	2.92%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.683e+00	0.3182	362.0	2.52%	842.0	2.40%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.637e+00	0.3319	405.0	2.82%	945.8	2.70%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.616e+00	0.3375	2.0	0.01%	2.7	0.01%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.599e+00	0.3420	157.0	1.09%	357.6	1.02%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.588e+00	0.3445	38.0	0.26%	80.7	0.23%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.559e+00	0.3531	994.0	6.91%	2362.9	6.75%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.557e+00	0.3531	2158.0	15.01%	5174.4	14.77%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.506e+00	0.3693	332.0	2.31%	775.4	2.21%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.488e+00	0.3746	117.0	0.81%	265.5	0.76%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.374e+00	0.4182	1179.0	8.20%	2819.6	8.05%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.343e+00	0.4296	424.0	2.95%	1001.0	2.86%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.327e+00	0.4349	2360.0	16.42%	5682.6	16.22%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.293e+00	0.4483	1329.0	9.24%	3187.7	9.10%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.190e+00	0.4950	993.0	6.91%	2381.7	6.80%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.143e+00	0.5170	1197.0	8.33%	2878.7	8.22%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.023e+00	0.5808	3022.0	21.02%	7320.6	20.90%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.006e+00	0.5884	609.0	4.24%	1463.5	4.18%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-9.256e-01	0.6353	725.0	5.04%	1750.0	5.00%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-9.216e-01	0.6354	56.0	0.39%	131.1	0.37%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-8.839e-01	0.6574	1990.0	13.84%	4826.4	13.78%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.565e-01	0.6731	271.0	1.89%	652.9	1.86%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-8.422e-01	0.6803	319.0	2.22%	769.2	2.20%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.759e-01	0.8004	188.0	1.31%	458.3	1.31%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.706e-01	0.8017	249.0	1.73%	607.3	1.73%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.454e-01	0.8192	115.0	0.80%	281.4	0.80%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-6.366e-01	0.8235	406.0	2.82%	992.5	2.83%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.357e-01	0.8235	390.0	2.71%	953.5	2.72%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.353e-01	0.8235	56.0	0.39%	137.3	0.39%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.562e-01	0.8827	176.0	1.22%	434.3	1.24%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-5.157e-01	0.9160	744.0	5.18%	1828.5	5.22%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-4.936e-01	0.9331	408.0	2.84%	1007.7	2.88%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-4.654e-01	0.9563	19.0	0.13%	49.2	0.14%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.452e-01	0.9724	109.0	0.76%	274.6	0.78%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.895e-01	1.0000	118.0	0.82%	299.6	0.86%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.737e-01	1.0000	563.0	3.92%	1400.0	4.00%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.722e-01	1.0000	151.0	1.05%	382.7	1.09%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.722e-01	1.0000	151.0	1.05%	382.7	1.09%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.653e-01	1.0000	26.0	0.18%	69.6	0.20%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.559e-01	1.0000	628.0	4.37%	1561.2	4.46%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.497e-01	1.0000	2.0	0.01%	6.1	0.02%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.367e-01	1.0000	71.0	0.49%	184.4	0.53%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.261e-01	1.0000	359.0	2.50%	901.1	2.57%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.237e-01	1.0000	386.0	2.69%	968.4	2.76%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.070e-01	1.0000	3020.0	21.01%	7433.7	21.22%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-3.045e-01	1.0000	9.0	0.06%	26.1	0.07%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.988e-01	1.0000	1321.0	9.19%	3273.2	9.34%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-2.943e-01	1.0000	1262.0	8.78%	3129.7	8.93%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.839e-01	1.0000	2209.0	15.37%	5454.4	15.57%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-2.666e-01	1.0000	8.0	0.06%	24.7	0.07%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.531e-01	1.0000	4089.0	28.44%	10063.0	28.73%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.523e-01	1.0000	226.0	1.57%	578.4	1.65%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.227e-01	1.0000	2743.0	19.08%	6780.2	19.36%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.207e-01	1.0000	78.0	0.54%	208.1	0.59%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.035e-01	1.0000	719.0	5.00%	1809.8	5.17%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.023e-01	1.0000	74.0	0.51%	199.7	0.57%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.941e-01	1.0000	66.0	0.46%	179.4	0.51%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.848e-01	1.0000	198.0	1.38%	515.8	1.47%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.841e-01	1.0000	544.0	3.78%	1379.8	3.94%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.836e-01	1.0000	1533.0	10.66%	3822.0	10.91%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.816e-01	1.0000	144.0	1.00%	379.6	1.08%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.787e-01	1.0000	706.0	4.91%	1782.2	5.09%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.701e-01	1.0000	771.0	5.36%	1945.6	5.55%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.694e-01	1.0000	1141.0	7.94%	2860.5	8.17%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.639e-01	1.0000	292.0	2.03%	754.4	2.15%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.636e-01	1.0000	1080.0	7.51%	2711.2	7.74%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.582e-01	1.0000	156.0	1.09%	412.4	1.18%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.375e-01	1.0000	54.0	0.38%	152.3	0.43%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.212e-01	1.0000	8.0	0.06%	28.3	0.08%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.205e-01	1.0000	570.0	3.96%	1458.9	4.16%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.074e-01	1.0000	95.0	0.66%	262.0	0.75%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.051e-01	1.0000	3797.0	26.41%	9417.2	26.88%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.777e-02	1.0000	7.0	0.05%	26.0	0.07%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-8.693e-02	1.0000	320.0	2.23%	840.9	2.40%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-7.292e-02	1.0000	244.0	1.70%	651.5	1.86%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-7.255e-02	1.0000	167.0	1.16%	454.3	1.30%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.730e-02	1.0000	68.0	0.47%	197.9	0.56%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-6.185e-02	1.0000	497.0	3.46%	1295.4	3.70%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.711e-02	1.0000	1004.0	6.98%	2566.6	7.33%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-5.033e-02	1.0000	240.0	1.67%	648.9	1.85%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-4.369e-02	1.0000	269.0	1.87%	725.1	2.07%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.637e-02	1.0000	520.0	3.62%	1367.8	3.90%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.859e-02	1.0000	269.0	1.87%	733.7	2.09%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.670e-02	1.0000	1612.0	11.21%	4108.3	11.73%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.474e-02	1.0000	301.0	2.09%	818.5	2.34%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.446e-02	1.0000	6546.0	45.53%	16237.6	46.35%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.318e-02	1.0000	19.0	0.13%	73.9	0.21%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.292e-02	1.0000	57.0	0.40%	183.4	0.52%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.283e-02	1.0000	231.0	1.61%	648.1	1.85%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.183e-02	1.0000	14.0	0.10%	58.1	0.17%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.088e-02	1.0000	3611.0	25.12%	9091.7	25.95%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.021e-02	1.0000	11.0	0.08%	49.4	0.14%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-8.687e-03	1.0000	9.0	0.06%	43.3	0.12%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-8.423e-03	1.0000	440.0	3.06%	1196.3	3.41%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-7.678e-03	1.0000	1469.0	10.22%	3797.5	10.84%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.182e-03	1.0000	17.0	0.12%	70.4	0.20%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-6.875e-03	1.0000	3500.0	24.35%	8839.3	25.23%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.839e-03	1.0000	407.0	2.83%	1118.9	3.19%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.523e-03	1.0000	6198.0	43.11%	15470.7	44.16%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.707e-03	1.0000	876.0	6.09%	2320.8	6.63%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-4.455e-03	1.0000	136.0	0.95%	410.0	1.17%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.124e-03	1.0000	200.0	1.39%	586.8	1.68%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.780e-03	1.0000	1058.0	7.36%	2794.8	7.98%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.718e-03	1.0000	794.0	5.52%	2125.2	6.07%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.043e-03	1.0000	2927.0	20.36%	7473.6	21.33%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.415e-03	1.0000	1184.0	8.24%	3130.5	8.94%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.294e-03	1.0000	289.0	2.01%	834.1	2.38%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-9.820e-04	1.0000	1010.0	7.03%	2698.3	7.70%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.730e-04	1.0000	408.0	2.84%	1151.5	3.29%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.500e-04	1.0000	2568.0	17.86%	6609.2	18.87%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-8.800e-04	1.0000	2481.0	17.26%	6395.6	18.26%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-7.170e-04	1.0000	1594.0	11.09%	4182.6	11.94%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.540e-04	1.0000	289.0	2.01%	848.2	2.42%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.780e-04	1.0000	782.0	5.44%	2142.6	6.12%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.250e-04	1.0000	1341.0	9.33%	3573.4	10.20%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.110e-04	1.0000	39.0	0.27%	158.2	0.45%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.990e-04	1.0000	1069.0	7.44%	2884.8	8.24%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.030e-04	1.0000	1565.0	10.89%	4159.6	11.87%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-7.300e-05	1.0000	363.0	2.53%	1069.7	3.05%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-6.600e-05	1.0000	23.0	0.16%	112.4	0.32%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-4.800e-05	1.0000	394.0	2.74%	1157.7	3.30%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.700e-05	1.0000	50.0	0.35%	204.7	0.58%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.400e-05	1.0000	674.0	4.69%	1905.1	5.44%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.700e-05	1.0000	3723.0	25.90%	9608.1	27.43%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.300e-05	1.0000	3572.0	24.85%	9240.8	26.38%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.000e-06	1.0000	81.0	0.56%	309.4	0.88%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.000e-06	1.0000	407.0	2.83%	1220.0	3.48%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.000e-06	1.0000	3021.0	21.01%	7905.1	22.57%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.000e-06	1.0000	97.0	0.67%	360.2	1.03%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.000e-06	1.0000	103.0	0.72%	378.0	1.08%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.000e-06	1.0000	65.0	0.45%	265.4	0.76%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.000e-06	1.0000	280.0	1.95%	888.5	2.54%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.000e-06	1.0000	1579.0	10.98%	4291.9	12.25%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	43.0	0.30%	203.3	0.58%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-0.000e+00	1.0000	1454.0	10.11%	4009.9	11.45%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-0.000e+00	1.0000	800.0	5.56%	2330.9	6.65%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-0.000e+00	1.0000	856.0	5.95%	2488.7	7.10%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	1230.0	8.56%	3474.0	9.92%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	105.0	0.73%	421.4	1.20%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	629.0	4.38%	1894.7	5.41%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-0.000e+00	1.0000	36.0	0.25%	199.0	0.57%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-0.000e+00	1.0000	41.0	0.29%	220.0	0.63%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	415.0	2.89%	1323.9	3.78%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-0.000e+00	1.0000	521.0	3.62%	1621.9	4.63%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-0.000e+00	1.0000	87.0	0.61%	376.5	1.07%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	930.0	6.47%	2734.3	7.81%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	4652.0	32.36%	12206.4	34.85%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-0.000e+00	1.0000	552.0	3.84%	1729.5	4.94%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-0.000e+00	1.0000	91.0	0.63%	406.9	1.16%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	303.0	2.11%	1048.9	2.99%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	117.0	0.81%	494.7	1.41%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	47.0	0.33%	276.6	0.79%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	156.0	1.09%	659.9	1.88%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	2990.0	20.80%	8459.7	24.15%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	150.0	1.04%	811.1	2.32%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	1570.0	10.92%	6077.8	17.35%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	205.0	1.43%	1860.6	5.31%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	691.0	4.81%	4410.2	12.59%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	377.0	2.62%	2904.7	8.29%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	323.0	2.25%	2578.2	7.36%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	166.0	1.15%	1674.5	4.78%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	1202.0	8.36%	4309.5	12.30%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	0.000e+00	1.0000	1037.0	7.21%	3257.9	9.30%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	1030.0	7.16%	4492.0	12.82%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	42.0	0.29%	297.0	0.85%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	825.0	5.74%	3046.5	8.70%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	4499.0	31.30%	12230.2	34.91%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	44.0	0.31%	458.9	1.31%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	466.0	3.24%	2218.8	6.33%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	1814.0	12.62%	5864.5	16.74%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	884.0	6.15%	3465.3	9.89%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	536.0	3.73%	2335.7	6.67%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	683.0	4.75%	2989.2	8.53%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	1702.0	11.84%	6207.8	17.72%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	827.0	5.75%	2932.0	8.37%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	1495.0	10.40%	5337.2	15.24%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	0.000e+00	1.0000	6496.0	45.19%	17038.5	48.64%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	1141.0	7.94%	6094.0	17.40%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	1750.0	12.17%	6961.9	19.87%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	954.0	6.64%	3867.6	11.04%