Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 11096)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 38058)	% of Background Sequences with Motif
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2473	-5.696e+03	0.0000	4748.0	42.79%	2553.7	6.71%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2405	-5.539e+03	0.0000	4698.0	42.34%	2577.2	6.78%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2401	-5.530e+03	0.0000	4307.0	38.82%	2060.4	5.42%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-2300	-5.297e+03	0.0000	4240.0	38.21%	2099.8	5.52%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2250	-5.181e+03	0.0000	4818.0	43.42%	2988.0	7.86%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-2158	-4.971e+03	0.0000	3902.0	35.17%	1847.2	4.86%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-1798	-4.141e+03	0.0000	3092.0	27.87%	1307.8	3.44%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1481	-3.411e+03	0.0000	2428.0	21.88%	925.4	2.43%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-701	-1.614e+03	0.0000	1493.0	13.46%	786.1	2.07%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-381	-8.774e+02	0.0000	947.0	8.53%	587.0	1.54%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-330	-7.615e+02	0.0000	2286.0	20.60%	3270.7	8.60%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-284	-6.543e+02	0.0000	1405.0	12.66%	1604.2	4.22%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-273	-6.287e+02	0.0000	1119.0	10.08%	1107.9	2.91%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-262	-6.034e+02	0.0000	1057.0	9.53%	1031.5	2.71%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-258	-5.946e+02	0.0000	2041.0	18.39%	3100.2	8.15%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-238	-5.496e+02	0.0000	2656.0	23.94%	4747.7	12.48%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-230	-5.307e+02	0.0000	2321.0	20.92%	3954.2	10.40%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-217	-5.007e+02	0.0000	2026.0	18.26%	3315.3	8.72%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-214	-4.934e+02	0.0000	1582.0	14.26%	2294.8	6.03%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-207	-4.766e+02	0.0000	3501.0	31.55%	7330.4	19.27%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-168	-3.890e+02	0.0000	5393.0	48.60%	13587.0	35.72%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-156	-3.603e+02	0.0000	3374.0	30.41%	7508.4	19.74%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-143	-3.302e+02	0.0000	860.0	7.75%	1092.3	2.87%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-140	-3.229e+02	0.0000	382.0	3.44%	257.6	0.68%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-131	-3.034e+02	0.0000	389.0	3.51%	285.0	0.75%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-127	-2.924e+02	0.0000	2162.0	19.48%	4403.5	11.58%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-126	-2.904e+02	0.0000	1914.0	17.25%	3744.3	9.84%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-122	-2.811e+02	0.0000	321.0	2.89%	208.9	0.55%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-121	-2.797e+02	0.0000	342.0	3.08%	238.6	0.63%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-112	-2.589e+02	0.0000	1402.0	12.64%	2538.4	6.67%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-110	-2.539e+02	0.0000	1655.0	14.92%	3209.9	8.44%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-103	-2.383e+02	0.0000	1891.0	17.04%	3910.8	10.28%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-95	-2.195e+02	0.0000	2958.0	26.66%	7078.0	18.61%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-79	-1.839e+02	0.0000	945.0	8.52%	1663.9	4.37%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-78	-1.813e+02	0.0000	1744.0	15.72%	3788.4	9.96%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-77	-1.785e+02	0.0000	1393.0	12.55%	2841.4	7.47%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-77	-1.779e+02	0.0000	2268.0	20.44%	5305.8	13.95%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-74	-1.722e+02	0.0000	1068.0	9.63%	2015.3	5.30%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-68	-1.584e+02	0.0000	1383.0	12.46%	2911.7	7.66%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-68	-1.581e+02	0.0000	2457.0	22.14%	5996.1	15.77%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-68	-1.579e+02	0.0000	286.0	2.58%	282.3	0.74%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-65	-1.519e+02	0.0000	1891.0	17.04%	4375.7	11.51%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-63	-1.466e+02	0.0000	1671.0	15.06%	3778.1	9.93%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-62	-1.432e+02	0.0000	1539.0	13.87%	3425.4	9.01%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-61	-1.427e+02	0.0000	1937.0	17.46%	4568.3	12.01%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-60	-1.401e+02	0.0000	2873.0	25.89%	7397.8	19.45%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-57	-1.326e+02	0.0000	1149.0	10.36%	2405.9	6.33%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-54	-1.266e+02	0.0000	2661.0	23.98%	6859.3	18.04%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-52	-1.214e+02	0.0000	2601.0	23.44%	6719.0	17.67%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-49	-1.146e+02	0.0000	172.0	1.55%	146.4	0.38%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-49	-1.130e+02	0.0000	1291.0	11.63%	2905.9	7.64%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-49	-1.129e+02	0.0000	954.0	8.60%	1978.3	5.20%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-48	-1.108e+02	0.0000	2503.0	22.56%	6512.0	17.12%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-46	-1.064e+02	0.0000	2304.0	20.76%	5940.1	15.62%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-44	-1.021e+02	0.0000	2869.0	25.86%	7730.1	20.32%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-43	-1.011e+02	0.0000	895.0	8.07%	1879.9	4.94%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-42	-9.770e+01	0.0000	395.0	3.56%	626.0	1.65%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-42	-9.748e+01	0.0000	1753.0	15.80%	4353.1	11.45%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-41	-9.662e+01	0.0000	552.0	4.97%	1006.2	2.65%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-41	-9.635e+01	0.0000	972.0	8.76%	2114.1	5.56%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-41	-9.492e+01	0.0000	1179.0	10.63%	2701.4	7.10%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-40	-9.416e+01	0.0000	1099.0	9.90%	2480.7	6.52%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-40	-9.340e+01	0.0000	676.0	6.09%	1335.5	3.51%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-40	-9.259e+01	0.0000	557.0	5.02%	1035.0	2.72%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-40	-9.247e+01	0.0000	2366.0	21.32%	6258.7	16.46%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-39	-9.099e+01	0.0000	6284.0	56.63%	19153.3	50.36%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-38	-8.927e+01	0.0000	454.0	4.09%	792.3	2.08%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-38	-8.867e+01	0.0000	1199.0	10.81%	2799.8	7.36%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-38	-8.782e+01	0.0000	1393.0	12.55%	3366.2	8.85%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-38	-8.758e+01	0.0000	1355.0	12.21%	3257.4	8.56%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-35	-8.230e+01	0.0000	1166.0	10.51%	2748.7	7.23%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-34	-7.894e+01	0.0000	284.0	2.56%	427.4	1.12%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-34	-7.830e+01	0.0000	1421.0	12.81%	3522.2	9.26%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-33	-7.678e+01	0.0000	586.0	5.28%	1176.8	3.09%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-32	-7.476e+01	0.0000	389.0	3.51%	685.7	1.80%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-32	-7.452e+01	0.0000	1530.0	13.79%	3878.4	10.20%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-32	-7.431e+01	0.0000	784.0	7.07%	1722.3	4.53%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-31	-7.191e+01	0.0000	1493.0	13.46%	3790.4	9.97%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-30	-7.017e+01	0.0000	1369.0	12.34%	3435.6	9.03%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-29	-6.689e+01	0.0000	982.0	8.85%	2328.7	6.12%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-28	-6.633e+01	0.0000	1181.0	10.64%	2911.8	7.66%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-26	-6.196e+01	0.0000	627.0	5.65%	1362.8	3.58%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-26	-6.166e+01	0.0000	1522.0	13.72%	3972.4	10.44%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-25	-5.974e+01	0.0000	1391.0	12.54%	3594.5	9.45%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-25	-5.847e+01	0.0000	982.0	8.85%	2391.1	6.29%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-24	-5.669e+01	0.0000	279.0	2.51%	482.6	1.27%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-24	-5.669e+01	0.0000	279.0	2.51%	482.6	1.27%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-24	-5.649e+01	0.0000	2948.0	26.57%	8518.2	22.40%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-23	-5.447e+01	0.0000	1497.0	13.49%	3968.8	10.44%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-23	-5.395e+01	0.0000	1382.0	12.45%	3623.4	9.53%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-22	-5.194e+01	0.0000	1082.0	9.75%	2740.3	7.21%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-21	-5.058e+01	0.0000	504.0	4.54%	1091.8	2.87%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-21	-4.990e+01	0.0000	381.0	3.43%	766.1	2.01%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-21	-4.989e+01	0.0000	1135.0	10.23%	2917.1	7.67%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-20	-4.831e+01	0.0000	890.0	8.02%	2204.8	5.80%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-20	-4.786e+01	0.0000	2154.0	19.41%	6096.3	16.03%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-20	-4.619e+01	0.0000	1527.0	13.76%	4151.3	10.92%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-19	-4.526e+01	0.0000	469.0	4.23%	1026.5	2.70%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-19	-4.524e+01	0.0000	655.0	5.90%	1547.4	4.07%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-19	-4.409e+01	0.0000	186.0	1.68%	303.2	0.80%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-18	-4.369e+01	0.0000	1647.0	14.84%	4554.9	11.98%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-18	-4.366e+01	0.0000	2041.0	18.39%	5795.9	15.24%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-18	-4.311e+01	0.0000	2773.0	24.99%	8153.1	21.44%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-18	-4.274e+01	0.0000	1077.0	9.71%	2812.5	7.40%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-16	-3.864e+01	0.0000	4842.0	43.64%	15097.7	39.70%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-16	-3.815e+01	0.0000	718.0	6.47%	1785.0	4.69%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-16	-3.762e+01	0.0000	1859.0	16.75%	5303.8	13.95%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-16	-3.690e+01	0.0000	542.0	4.88%	1285.3	3.38%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-15	-3.677e+01	0.0000	542.0	4.88%	1286.6	3.38%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-15	-3.528e+01	0.0000	779.0	7.02%	1991.8	5.24%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-15	-3.514e+01	0.0000	1266.0	11.41%	3475.4	9.14%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-15	-3.471e+01	0.0000	374.0	3.37%	828.6	2.18%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-14	-3.294e+01	0.0000	677.0	6.10%	1710.5	4.50%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-13	-3.132e+01	0.0000	2981.0	26.87%	9042.7	23.78%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-13	-3.120e+01	0.0000	335.0	3.02%	742.3	1.95%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-13	-3.094e+01	0.0000	165.0	1.49%	297.5	0.78%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-13	-3.078e+01	0.0000	752.0	6.78%	1954.7	5.14%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-12	-2.932e+01	0.0000	226.0	2.04%	459.3	1.21%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-12	-2.845e+01	0.0000	757.0	6.82%	1994.0	5.24%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-12	-2.781e+01	0.0000	3803.0	34.27%	11843.5	31.14%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-11	-2.724e+01	0.0000	757.0	6.82%	2006.9	5.28%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-11	-2.721e+01	0.0000	259.0	2.33%	558.4	1.47%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-11	-2.664e+01	0.0000	3018.0	27.20%	9261.3	24.35%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-11	-2.659e+01	0.0000	1409.0	12.70%	4041.8	10.63%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-11	-2.533e+01	0.0000	531.0	4.79%	1348.3	3.55%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-10	-2.507e+01	0.0000	587.0	5.29%	1517.6	3.99%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-10	-2.499e+01	0.0000	2794.0	25.18%	8559.0	22.50%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-10	-2.450e+01	0.0000	1875.0	16.90%	5568.0	14.64%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-10	-2.429e+01	0.0000	106.0	0.96%	178.7	0.47%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-10	-2.419e+01	0.0000	1649.0	14.86%	4846.8	12.74%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-10	-2.409e+01	0.0000	241.0	2.17%	527.4	1.39%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-10	-2.381e+01	0.0000	1153.0	10.39%	3275.0	8.61%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-10	-2.349e+01	0.0000	746.0	6.72%	2015.3	5.30%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-10	-2.334e+01	0.0000	338.0	3.05%	803.8	2.11%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-10	-2.328e+01	0.0000	1430.0	12.89%	4161.5	10.94%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-9	-2.271e+01	0.0000	250.0	2.25%	560.7	1.47%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-9	-2.247e+01	0.0000	2765.0	24.92%	8519.4	22.40%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-9	-2.137e+01	0.0000	4522.0	40.75%	14425.0	37.93%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-8	-2.062e+01	0.0000	1115.0	10.05%	3204.1	8.42%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-8	-1.985e+01	0.0000	803.0	7.24%	2237.4	5.88%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-8	-1.982e+01	0.0000	164.0	1.48%	343.4	0.90%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-8	-1.958e+01	0.0000	2304.0	20.76%	7068.1	18.58%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-8	-1.877e+01	0.0000	358.0	3.23%	898.5	2.36%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-8	-1.856e+01	0.0000	173.0	1.56%	374.7	0.99%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-7	-1.833e+01	0.0000	580.0	5.23%	1569.8	4.13%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-7	-1.751e+01	0.0000	1538.0	13.86%	4615.3	12.14%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-7	-1.739e+01	0.0000	1656.0	14.92%	5000.2	13.15%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-7	-1.721e+01	0.0000	300.0	2.70%	742.7	1.95%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-7	-1.701e+01	0.0000	1318.0	11.88%	3915.9	10.30%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-7	-1.691e+01	0.0000	687.0	6.19%	1917.9	5.04%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-7	-1.617e+01	0.0000	953.0	8.59%	2764.9	7.27%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-6	-1.602e+01	0.0000	1890.0	17.03%	5794.1	15.23%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-6	-1.565e+01	0.0000	206.0	1.86%	484.2	1.27%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-6	-1.557e+01	0.0000	307.0	2.77%	777.7	2.04%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-6	-1.503e+01	0.0000	459.0	4.14%	1239.3	3.26%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-6	-1.478e+01	0.0000	174.0	1.57%	401.0	1.05%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-6	-1.459e+01	0.0000	1300.0	11.72%	3907.0	10.27%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-6	-1.431e+01	0.0000	5271.0	47.50%	17192.2	45.20%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-6	-1.418e+01	0.0000	688.0	6.20%	1960.2	5.15%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-6	-1.389e+01	0.0000	801.0	7.22%	2321.6	6.10%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-5	-1.359e+01	0.0000	720.0	6.49%	2070.2	5.44%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-5	-1.352e+01	0.0000	147.0	1.32%	333.7	0.88%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-5	-1.326e+01	0.0000	1039.0	9.36%	3092.8	8.13%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-5	-1.309e+01	0.0000	744.0	6.71%	2155.0	5.67%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-5	-1.280e+01	0.0000	1179.0	10.63%	3553.6	9.34%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-5	-1.277e+01	0.0000	101.0	0.91%	212.2	0.56%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-5	-1.240e+01	0.0000	2011.0	18.12%	6286.2	16.53%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-5	-1.232e+01	0.0000	1877.0	16.92%	5846.2	15.37%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-5	-1.226e+01	0.0000	1384.0	12.47%	4231.4	11.13%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-5	-1.188e+01	0.0000	262.0	2.36%	679.3	1.79%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-4	-1.146e+01	0.0000	695.0	6.26%	2028.0	5.33%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-1.105e+01	0.0000	345.0	3.11%	939.2	2.47%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-4	-1.102e+01	0.0000	906.0	8.17%	2710.9	7.13%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-4	-1.092e+01	0.0000	501.0	4.52%	1424.1	3.74%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-4	-1.092e+01	0.0000	1319.0	11.89%	4052.9	10.66%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-4	-1.048e+01	0.0001	686.0	6.18%	2016.7	5.30%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-4	-1.017e+01	0.0001	1426.0	12.85%	4422.5	11.63%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-4	-9.961e+00	0.0001	1073.0	9.67%	3274.5	8.61%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-4	-9.353e+00	0.0002	453.0	4.08%	1298.8	3.41%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-4	-9.324e+00	0.0002	591.0	5.33%	1735.4	4.56%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-3	-8.775e+00	0.0004	1417.0	12.77%	4432.3	11.65%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-3	-7.732e+00	0.0010	586.0	5.28%	1750.1	4.60%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-3	-7.304e+00	0.0016	494.0	4.45%	1464.5	3.85%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-7.099e+00	0.0019	326.0	2.94%	935.7	2.46%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-6.874e+00	0.0024	268.0	2.42%	757.1	1.99%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-2	-6.430e+00	0.0037	401.0	3.61%	1184.2	3.11%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-2	-6.423e+00	0.0037	513.0	4.62%	1543.7	4.06%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-2	-6.385e+00	0.0038	315.0	2.84%	912.5	2.40%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-5.904e+00	0.0062	4260.0	38.39%	14114.8	37.11%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-5.884e+00	0.0063	2916.0	26.28%	9557.4	25.13%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-2	-5.791e+00	0.0068	666.0	6.00%	2054.3	5.40%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.694e+00	0.0075	867.0	7.81%	2715.0	7.14%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-2	-5.640e+00	0.0079	132.0	1.19%	354.1	0.93%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-5.632e+00	0.0079	129.0	1.16%	345.6	0.91%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-5.433e+00	0.0096	368.0	3.32%	1099.0	2.89%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-2	-5.283e+00	0.0111	1248.0	11.25%	3989.8	10.49%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-2	-5.059e+00	0.0138	196.0	1.77%	560.0	1.47%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-5.053e+00	0.0138	237.0	2.14%	688.8	1.81%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-2	-4.853e+00	0.0168	1862.0	16.78%	6059.7	15.93%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-2	-4.734e+00	0.0188	19.0	0.17%	35.7	0.09%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-4.644e+00	0.0205	72.0	0.65%	184.0	0.48%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-4.499e+00	0.0236	2103.0	18.95%	6887.4	18.11%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-4.456e+00	0.0245	206.0	1.86%	600.1	1.58%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-4.027e+00	0.0374	113.0	1.02%	315.4	0.83%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-3.987e+00	0.0387	94.0	0.85%	257.6	0.68%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-3.969e+00	0.0393	1124.0	10.13%	3629.6	9.54%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-3.953e+00	0.0397	315.0	2.84%	959.2	2.52%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-1	-3.733e+00	0.0492	1721.0	15.51%	5642.4	14.84%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-3.610e+00	0.0554	2180.0	19.65%	7197.2	18.92%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-3.602e+00	0.0556	1053.0	9.49%	3408.0	8.96%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.471e+00	0.0630	155.0	1.40%	455.3	1.20%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.295e+00	0.0748	138.0	1.24%	404.5	1.06%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-3.096e+00	0.0909	441.0	3.97%	1394.9	3.67%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.047e+00	0.0950	1757.0	15.83%	5803.6	15.26%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-2.910e+00	0.1085	113.0	1.02%	331.3	0.87%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-1	-2.878e+00	0.1114	252.0	2.27%	780.9	2.05%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-2.833e+00	0.1161	3.0	0.03%	3.9	0.01%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-1	-2.742e+00	0.1266	619.0	5.58%	1997.2	5.25%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-2.675e+00	0.1347	1877.0	16.92%	6233.3	16.39%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-2.658e+00	0.1364	3184.0	28.70%	10672.4	28.06%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-1	-2.622e+00	0.1408	565.0	5.09%	1823.0	4.79%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-2.530e+00	0.1536	314.0	2.83%	993.9	2.61%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.516e+00	0.1550	24.0	0.22%	60.4	0.16%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.386e+00	0.1758	476.0	4.29%	1535.1	4.04%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.339e+00	0.1834	271.0	2.44%	857.4	2.25%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.244e+00	0.2009	767.0	6.91%	2515.8	6.61%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-2.230e+00	0.2027	779.0	7.02%	2556.8	6.72%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.217e+00	0.2044	204.0	1.84%	640.3	1.68%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.175e+00	0.2123	95.0	0.86%	286.1	0.75%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.090e+00	0.2302	461.0	4.15%	1497.1	3.94%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.973e+00	0.2577	1376.0	12.40%	4587.9	12.06%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.966e+00	0.2582	1588.0	14.31%	5306.3	13.95%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.921e+00	0.2691	270.0	2.43%	867.6	2.28%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.915e+00	0.2695	1100.0	9.91%	3657.2	9.62%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.824e+00	0.2938	115.0	1.04%	358.3	0.94%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.690e+00	0.3345	31.0	0.28%	89.4	0.24%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.655e+00	0.3450	7.0	0.06%	16.2	0.04%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.618e+00	0.3565	1171.0	10.55%	3919.6	10.31%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.558e+00	0.3772	773.0	6.97%	2575.5	6.77%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.548e+00	0.3791	139.0	1.25%	444.6	1.17%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.370e+00	0.4514	344.0	3.10%	1137.8	2.99%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.252e+00	0.5057	142.0	1.28%	463.8	1.22%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.210e+00	0.5253	435.0	3.92%	1453.6	3.82%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.153e+00	0.5537	37.0	0.33%	116.8	0.31%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.140e+00	0.5587	245.0	2.21%	814.2	2.14%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.131e+00	0.5615	312.0	2.81%	1041.9	2.74%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.115e+00	0.5681	346.0	3.12%	1157.2	3.04%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.106e+00	0.5712	16.0	0.14%	48.8	0.13%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.100e+00	0.5719	331.0	2.98%	1107.0	2.91%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.052e+00	0.5977	150.0	1.35%	497.7	1.31%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.045e+00	0.5997	64.0	0.58%	208.8	0.55%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.031e+00	0.6060	161.0	1.45%	535.6	1.41%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.765e-01	0.7041	167.0	1.51%	562.1	1.48%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-8.594e-01	0.7134	51.0	0.46%	170.0	0.45%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-8.569e-01	0.7134	92.0	0.83%	308.1	0.81%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-8.479e-01	0.7161	2.0	0.02%	5.8	0.02%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-8.388e-01	0.7198	965.0	8.70%	3289.1	8.65%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-8.359e-01	0.7198	39.0	0.35%	129.2	0.34%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-8.148e-01	0.7316	48.0	0.43%	160.2	0.42%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-7.951e-01	0.7433	580.0	5.23%	1977.7	5.20%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-7.861e-01	0.7471	265.0	2.39%	901.3	2.37%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-7.792e-01	0.7495	63.0	0.57%	212.6	0.56%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-7.751e-01	0.7496	7.0	0.06%	23.0	0.06%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.593e-01	0.7587	280.0	2.52%	954.1	2.51%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.413e-01	0.7695	289.0	2.60%	986.8	2.59%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-7.346e-01	0.7719	74.0	0.67%	251.5	0.66%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-7.155e-01	0.7838	273.0	2.46%	933.5	2.45%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.868e-01	0.8036	974.0	8.78%	3338.9	8.78%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-6.854e-01	0.8036	1025.0	9.24%	3513.3	9.24%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-6.495e-01	0.8279	2.0	0.02%	6.6	0.02%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-6.477e-01	0.8279	133.0	1.20%	457.5	1.20%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-6.366e-01	0.8325	118.0	1.06%	406.6	1.07%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.928e-01	0.8666	17.0	0.15%	59.5	0.16%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-5.769e-01	0.8773	438.0	3.95%	1512.0	3.98%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-5.447e-01	0.9027	29.0	0.26%	102.6	0.27%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.166e-01	0.9250	115.0	1.04%	402.1	1.06%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-5.034e-01	0.9340	65.0	0.59%	229.7	0.60%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.837e-01	0.9491	90.0	0.81%	317.6	0.84%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.750e-01	0.9540	1547.0	13.94%	5340.5	14.04%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-4.662e-01	0.9590	449.0	4.05%	1561.2	4.10%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-4.356e-01	0.9853	1954.0	17.61%	6748.4	17.74%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.130e-01	1.0000	98.0	0.88%	349.7	0.92%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.125e-01	1.0000	82.0	0.74%	293.7	0.77%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.955e-01	1.0000	206.0	1.86%	727.4	1.91%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.408e-01	1.0000	50.0	0.45%	184.3	0.48%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.357e-01	1.0000	2438.0	21.97%	8440.8	22.19%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.232e-01	1.0000	387.0	3.49%	1365.8	3.59%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-3.215e-01	1.0000	43.0	0.39%	160.6	0.42%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.956e-01	1.0000	2969.0	26.76%	10280.2	27.03%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.786e-01	1.0000	1528.0	13.77%	5323.5	14.00%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-2.753e-01	1.0000	11.0	0.10%	45.7	0.12%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.677e-01	1.0000	104.0	0.94%	381.2	1.00%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.677e-01	1.0000	104.0	0.94%	381.2	1.00%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.642e-01	1.0000	297.0	2.68%	1060.9	2.79%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-2.511e-01	1.0000	309.0	2.78%	1104.2	2.90%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.161e-01	1.0000	270.0	2.43%	973.2	2.56%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.002e-01	1.0000	120.0	1.08%	445.5	1.17%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.975e-01	1.0000	573.0	5.16%	2037.3	5.36%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.912e-01	1.0000	275.0	2.48%	995.9	2.62%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.909e-01	1.0000	414.0	3.73%	1483.3	3.90%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.660e-01	1.0000	4900.0	44.16%	16977.5	44.64%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.630e-01	1.0000	1010.0	9.10%	3569.4	9.39%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.510e-01	1.0000	4.0	0.04%	22.0	0.06%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.366e-01	1.0000	60.0	0.54%	236.4	0.62%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.304e-01	1.0000	9.0	0.08%	43.2	0.11%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.615e-02	1.0000	88.0	0.79%	345.9	0.91%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-9.139e-02	1.0000	7.0	0.06%	37.9	0.10%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-8.529e-02	1.0000	41.0	0.37%	172.6	0.45%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-8.511e-02	1.0000	4.0	0.04%	24.4	0.06%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-6.888e-02	1.0000	301.0	2.71%	1122.0	2.95%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.364e-02	1.0000	769.0	6.93%	2786.7	7.33%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-4.952e-02	1.0000	975.0	8.79%	3513.7	9.24%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-4.723e-02	1.0000	190.0	1.71%	732.6	1.93%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-3.972e-02	1.0000	176.0	1.59%	685.1	1.80%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-3.791e-02	1.0000	510.0	4.60%	1885.8	4.96%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.772e-02	1.0000	218.0	1.96%	839.2	2.21%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.157e-02	1.0000	129.0	1.16%	517.6	1.36%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.138e-02	1.0000	4.0	0.04%	29.4	0.08%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.867e-02	1.0000	23.0	0.21%	113.5	0.30%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.785e-02	1.0000	557.0	5.02%	2063.8	5.43%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.678e-02	1.0000	111.0	1.00%	453.3	1.19%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.660e-02	1.0000	2714.0	24.46%	9604.1	25.25%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.680e-02	1.0000	44.0	0.40%	203.2	0.53%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.679e-02	1.0000	2785.0	25.10%	9880.9	25.98%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.642e-02	1.0000	259.0	2.33%	1008.4	2.65%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.567e-02	1.0000	821.0	7.40%	3021.7	7.95%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.559e-02	1.0000	9.0	0.08%	57.7	0.15%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.416e-02	1.0000	225.0	2.03%	887.4	2.33%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.375e-02	1.0000	111.0	1.00%	464.6	1.22%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.348e-02	1.0000	2925.0	26.36%	10379.1	27.29%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.154e-02	1.0000	163.0	1.47%	662.4	1.74%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.061e-02	1.0000	18.0	0.16%	100.1	0.26%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-9.521e-03	1.0000	16.0	0.14%	92.5	0.24%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-9.155e-03	1.0000	554.0	4.99%	2089.0	5.49%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-8.538e-03	1.0000	388.0	3.50%	1493.6	3.93%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.931e-03	1.0000	435.0	3.92%	1666.0	4.38%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.181e-03	1.0000	518.0	4.67%	1967.2	5.17%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.734e-03	1.0000	462.0	4.16%	1768.0	4.65%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-6.278e-03	1.0000	928.0	8.36%	3436.0	9.03%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.471e-03	1.0000	1245.0	11.22%	4570.3	12.02%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-4.043e-03	1.0000	359.0	3.24%	1406.5	3.70%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.885e-03	1.0000	62.0	0.56%	291.8	0.77%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.447e-03	1.0000	36.0	0.32%	186.3	0.49%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-3.025e-03	1.0000	500.0	4.51%	1926.6	5.07%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.959e-03	1.0000	241.0	2.17%	978.3	2.57%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.830e-03	1.0000	2351.0	21.19%	8471.0	22.27%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.611e-03	1.0000	56.0	0.50%	276.8	0.73%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.608e-03	1.0000	728.0	6.56%	2766.6	7.27%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.568e-03	1.0000	176.0	1.59%	745.5	1.96%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.498e-03	1.0000	823.0	7.42%	3109.7	8.18%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.143e-03	1.0000	1133.0	10.21%	4224.2	11.11%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-9.410e-04	1.0000	12.0	0.11%	88.3	0.23%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-8.850e-04	1.0000	1146.0	10.33%	4279.4	11.25%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-7.570e-04	1.0000	802.0	7.23%	3054.5	8.03%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-7.020e-04	1.0000	967.0	8.71%	3648.8	9.59%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.490e-04	1.0000	4911.0	44.26%	17409.5	45.78%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.990e-04	1.0000	148.0	1.33%	652.2	1.71%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.270e-04	1.0000	43.0	0.39%	233.0	0.61%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-3.020e-04	1.0000	2884.0	25.99%	10434.0	27.43%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.200e-04	1.0000	849.0	7.65%	3258.6	8.57%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.900e-04	1.0000	2333.0	21.03%	8526.6	22.42%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.660e-04	1.0000	77.0	0.69%	385.5	1.01%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.450e-04	1.0000	578.0	5.21%	2284.5	6.01%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.040e-04	1.0000	621.0	5.60%	2449.4	6.44%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.400e-05	1.0000	603.0	5.43%	2388.5	6.28%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.800e-05	1.0000	771.0	6.95%	3006.6	7.91%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.900e-05	1.0000	2322.0	20.93%	8539.8	22.45%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-4.300e-05	1.0000	1972.0	17.77%	7311.6	19.22%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.200e-05	1.0000	38.0	0.34%	230.3	0.61%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.000e-05	1.0000	327.0	2.95%	1382.5	3.64%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.000e-05	1.0000	18.0	0.16%	140.9	0.37%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.000e-06	1.0000	76.0	0.68%	409.3	1.08%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.000e-06	1.0000	60.0	0.54%	355.2	0.93%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.000e-06	1.0000	1789.0	16.12%	6778.4	17.82%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.000e-06	1.0000	275.0	2.48%	1236.7	3.25%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-0.000e+00	1.0000	1222.0	11.01%	4775.7	12.56%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	193.0	1.74%	932.9	2.45%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	3581.0	32.27%	13169.9	34.63%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-0.000e+00	1.0000	415.0	3.74%	1815.7	4.77%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-0.000e+00	1.0000	1248.0	11.25%	4911.2	12.91%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-0.000e+00	1.0000	294.0	2.65%	1350.0	3.55%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-0.000e+00	1.0000	31.0	0.28%	243.3	0.64%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-0.000e+00	1.0000	1052.0	9.48%	4213.5	11.08%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-0.000e+00	1.0000	295.0	2.66%	1373.3	3.61%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-0.000e+00	1.0000	48.0	0.43%	337.2	0.89%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	36.0	0.32%	284.9	0.75%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-0.000e+00	1.0000	214.0	1.93%	1072.7	2.82%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-0.000e+00	1.0000	5043.0	45.45%	18381.6	48.33%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-0.000e+00	1.0000	25.0	0.23%	236.0	0.62%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	70.0	0.63%	469.7	1.23%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-0.000e+00	1.0000	657.0	5.92%	2841.9	7.47%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	451.0	4.06%	2052.1	5.40%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	2352.0	21.20%	9061.5	23.83%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	881.0	7.94%	3728.6	9.80%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	2588.0	23.32%	9949.8	26.16%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-0.000e+00	1.0000	51.0	0.46%	412.3	1.08%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	308.0	2.78%	1553.9	4.09%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	676.0	6.09%	3018.5	7.94%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	225.0	2.03%	1219.9	3.21%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	60.0	0.54%	473.3	1.24%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-0.000e+00	1.0000	395.0	3.56%	1931.9	5.08%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-0.000e+00	1.0000	591.0	5.33%	2748.8	7.23%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	76.0	0.68%	645.5	1.70%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	111.0	1.00%	956.7	2.52%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	1302.0	11.73%	6349.7	16.70%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	154.0	1.39%	2044.5	5.38%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	537.0	4.84%	4885.3	12.85%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	293.0	2.64%	3264.8	8.58%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	252.0	2.27%	2909.1	7.65%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	131.0	1.18%	1802.8	4.74%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	979.0	8.82%	4604.5	12.11%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	0.000e+00	1.0000	756.0	6.81%	3590.6	9.44%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	668.0	6.02%	4632.9	12.18%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	33.0	0.30%	388.2	1.02%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	671.0	6.05%	3155.4	8.30%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	3404.0	30.68%	13357.1	35.12%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	35.0	0.32%	526.8	1.39%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	394.0	3.55%	2302.7	6.05%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	1409.0	12.70%	6510.3	17.12%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	687.0	6.19%	3967.7	10.43%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	410.0	3.70%	2667.3	7.01%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	521.0	4.70%	3356.0	8.82%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	1330.0	11.99%	6891.4	18.12%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	618.0	5.57%	3220.9	8.47%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	1185.0	10.68%	6076.9	15.98%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	891.0	8.03%	6820.2	17.93%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	1402.0	12.64%	7388.6	19.43%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	766.0	6.90%	4015.2	10.56%