Information for 2-GGCGGATTAA (Motif 2)

A C T G A C T G A G T C A C T G A C T G C G T A A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C T G A G T C A G T C
p-value:1e-4
log p-value:-9.912e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets114.0 +/- 0.0bp
Average Position of motif in Background96.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OTX1/MA0711.1/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:GGCGGATTAA
--CGGATTAN
 A C T G A C T G A G T C A C T G A C T G C G T A A C G T A C G T C G T A C G T A
A C G T A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A

GSC2/MA0891.1/Jaspar

Match Rank:2
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GGCGGATTAA-
-GNGGATTAGN
 A C T G A C T G A G T C A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T
A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

PH0123.1_Obox3/Jaspar

Match Rank:3
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---GGCGGATTAA----
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C T G A C T G A G T C A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

OTX2/MA0712.1/Jaspar

Match Rank:4
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:GGCGGATTAA
--NGGATTAA
 A C T G A C T G A G T C A C T G A C T G C G T A A C G T A C G T C G T A C G T A
A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

PH0122.1_Obox2/Jaspar

Match Rank:5
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---GGCGGATTAA----
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C T G A C T G A G T C A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GGCGGATTAA-
-NNGGATTAGN
 A C T G A C T G A G T C A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T
A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:GGCGGATTAA
--GGGATTAA
 A C T G A C T G A G T C A C T G A C T G C G T A A C G T A C G T C G T A C G T A
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

PH0137.1_Pitx1/Jaspar

Match Rank:8
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GGCGGATTAA----
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C T G A C T G A G T C A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GGCGGATTAA-----
AGAGGGGATTAATTTAT
 A C G T A C G T A C T G A C T G A G T C A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GGCGGATTAA-----
NNAAGGGATTAACGANT
 A C G T A C G T A C T G A C T G A G T C A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T