Information for 12-AGACAAGGGA (Motif 27)

C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A G T C A C G T A C G T A C T G A C G T A G T C A C G T
p-value:1e-3
log p-value:-7.833e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets132.0 +/- 0.0bp
Average Position of motif in Background52.5 +/- 72.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----AGACAAGGGA--
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox6/MA0515.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AGACAAGGGA
AAAACAATGG-
 A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G C G T A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AGACAAGGGA
-AACAAAGG-
 C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G C G T A
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AGACAAGGGA
AAAACAAAGG-
 A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G C G T A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGACAAGGGA
RAACAATGGN
 C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G C G T A
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGACAAGGGA
-RACAAWGG-
 C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G C G T A
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AGACAAGGGA--
NNAGGGACAAGGGCNC
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGACAAGGGA--
CTCACACAATGGCGC
 A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGACAAGGGA
CAGATAAGGN-
 A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G C G T A
T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AGACAAGGGA
VRRACAAWGG-
 A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T