Information for 15-GACCCAGTCT (Motif 29)

A C T G C G T A A G T C A G T C A G T C C G T A A C T G A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A G T C A C G T A C T G A C T G A C T G A C G T A G T C
p-value:1e-3
log p-value:-7.609e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif10.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets95.0 +/- 0.0bp
Average Position of motif in Background102.6 +/- 45.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GACCCAGTCT
BTGACCTAVTTW
 A C G T A C G T A C T G C G T A A G T C A G T C A G T C C G T A A C T G A C G T A G T C A C G T
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GACCCAGTCT
NNHYTGACCTAGWTT
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G T C C G T A A C T G A C G T A G T C A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GACCCAGTCT
TGCCCAGNHW
 A C T G C G T A A G T C A G T C A G T C C G T A A C T G A C G T A G T C A C G T
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GACCCAGTCT--
TTGACCTANTTATN
 A C G T A C G T A C T G C G T A A G T C A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GACCCAGTCT
TGACCTARTT-
 A C G T A C T G C G T A A G T C A G T C A G T C C G T A A C T G A C G T A G T C A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GACCCAGTCT
TGACCTARTT-
 A C G T A C T G C G T A A G T C A G T C A G T C C G T A A C T G A C G T A G T C A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GACCCAGTCT------
CGACCCAATCAACGGTG
 A C G T A C T G C G T A A G T C A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GACCCAGTCT
TGACCT-----
 A C G T A C T G C G T A A G T C A G T C A G T C C G T A A C T G A C G T A G T C A C G T
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

RORC/MA1151.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GACCCAGTCT-
TGACCTANTTAN
 A C G T A C T G C G T A A G T C A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C G T
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GACCCAGTCT--
----CTGTCTGG
 A C T G C G T A A G T C A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G