Information for 3-GACAATTCTCTA (Motif 4)

A C T G C G T A A G T C C G T A C G T A A C G T A C G T A G T C A C G T A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G C G T A A C T G C G T A C G T A A C G T A C G T A C T G A C G T A G T C
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0165.1_Sox11_2/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GACAATTCTCTA
NNCNNAACAATTNT---
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A G T C A C G T A G T C A C G T C G T A
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GACAATTCTCTA
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A G T C A C G T A G T C A C G T C G T A
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GACAATTCTCTA
GACAATGNN---
 A C T G C G T A A G T C C G T A C G T A A C G T A C G T A G T C A C G T A G T C A C G T C G T A
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:4
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GACAATTCTCTA
NNNNNGAACAATTGANN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A G T C A C G T A G T C A C G T C G T A
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GACAATTCTCTA
RNAACAATGG----
 A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A G T C A C G T A G T C A C G T C G T A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GACAATTCTCTA
AACAAT------
 A C T G C G T A A G T C C G T A C G T A A C G T A C G T A G T C A C G T A G T C A C G T C G T A
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GACAATTCTCTA----
-NNAATTCTCGNTNAN
 A C T G C G T A A G T C C G T A C G T A A C G T A C G T A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

PB0067.1_Sox18_1/Jaspar

Match Rank:8
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GACAATTCTCTA
NNTNANAACAATTNNA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A G T C A C G T A G T C A C G T C G T A
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GACAATTCTCTA
TTAAGAACAATAAATT-
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A G T C A C G T A G T C A C G T C G T A
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GACAATTCTCTA
NNGCACCTTTCTCC-
 A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A G T C A C G T A G T C A C G T C G T A
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T