Information for 6-AGCTGGGTTAAT (Motif 7)

C G T A A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A C G T A A G T C A G T C A G T C C G T A A C T G A G T C A C G T
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.0 +/- 0.0bp
Average Position of motif in Background128.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGCTGGGTTAAT--
AGAGCGGGGTCAAGTA
 A C G T A C G T C G T A A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PH0174.1_Vax1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGCTGGGTTAAT------
--CTNNGNTAATTAACNT
 C G T A A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G C A T C T A G C T A G T C A G A G C T G A C T G T C A G C T A C G A T C A G T C T G A C G T A A G T C A T C G A C G T

Hoxd3/MA0912.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGCTGGGTTAAT------
--TTGAGTTAATTAACCT
 C G T A A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0079.1_Hoxd3/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGCTGGGTTAAT------
--TTGAGTTAATTAACCT
 C G T A A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGCTGGGTTAAT
NMMNBAAAGGGTTAA-
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T C G T A C G T A A C G T
T A C G T G C A G T C A G C A T A C T G T G C A T C G A C T G A C A T G C T A G A C T G C A G T G A C T C G T A G T C A A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGCTGGGTTAAT
NAACAGCTGG------
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T C G T A C G T A A C G T
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.60
Offset:6
Orientation:forward strand
Alignment:AGCTGGGTTAAT--
------GKTAATGR
 C G T A A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGCTGGGTTAAT
HCAGCTGDTN----
 A C G T A C G T C G T A A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T C G T A C G T A A C G T
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T A C G T A C G T

PH0103.1_Meox1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGCTGGGTTAAT------
--CTGAGGTAATTACCNC
 C G T A A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C G A T T C A G C T G A C A T G T A C G G A C T T G C A G C T A C A G T A C G T C T G A G T A C G T A C A C G T A G T C

NKX6-2/MA0675.1/Jaspar

Match Rank:10
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:AGCTGGGTTAAT---
-------TTAATTAN
 C G T A A C T G A G T C A C G T A C T G A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G