Information for 1-ACTAAGGC (Motif 1)


Reverse Opposite:

p-value:1e-4
log p-value:-1.033e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif85.71%
Number of Background Sequences with motif13642.0
Percentage of Background Sequences with motif13.18%
Average Position of motif in Targets100.8 +/- 47.5bp
Average Position of motif in Background100.1 +/- 83.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-ACTAAGGC
AACAAAGG-

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ACTAAGGC
AAAACAAAGG-

SOX10/MA0442.2/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ACTAAGGC
AAAACAAAGAA

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ACTAAGGC
GGAACAAAGR-

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACTAAGGC
RACAAWGG-

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ACTAAGGC
VRRACAAWGG-

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACTAAGGC-
AGCCTCAGGCA

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ACTAAGGC-
AGCCTCAGGCA

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------ACTAAGGC---
AGAAGAACAAAGGACTA

TFAP2A/MA0003.3/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ACTAAGGC-
CGCCTCAGGCA