Information for 9-TTGGCTAACACA (Motif 11)


Reverse Opposite:

p-value:1e-4
log p-value:-9.602e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCTAACACA
NTTGGCANN----

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTGGCTAACACA-
-TGTCTGDCACCT

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTGGCTAACACA-
CTGTCTGTCACCT

PB0109.1_Bbx_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TTGGCTAACACA---
TGATTGTTAACAGTTGG

PB0081.1_Tcf1_1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTGGCTAACACA--
NNNTTAGTTAACTNANN

PH0167.1_Tcf1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TTGGCTAACACA--
NTTTTAGTTAACNNAGN

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TTGGCTAACACA
TGATTGGCTANN---

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TTGGCTAACACA
CCGATTGGCT------

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TTGGCTAACACA
TWGTCTGV----

PB0059.1_Six6_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TTGGCTAACACA---
AATAGGGTATCATATAT