Information for 2-GGTCGGTTGC (Motif 18)


Reverse Opposite:

p-value:1e-3
log p-value:-8.909e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets87.0 +/- 0.0bp
Average Position of motif in Background155.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGTCGGTTGC
-GGCVGTTR-

MYB/MA0100.3/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGTCGGTTGC-
-NNCAGTTGNN

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGTCGGTTGC
TGTCGGTT--

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGTCGGTTGC
TGGCAGTTGG

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGTCGGTTGC
BRRCVGTTDN

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGTCGGTTGC-------
--NCCGTTGCTANGNGN

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGTCGGTTGC-------
--NNCGTTGCTATGGNN

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GGTCGGTTGC-----
---CTGTTGCTAGGS

IRF5/MA1420.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GGTCGGTTGC--
AGTTTCGGTTTCGG

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGTCGGTTGC-----------
NTNNNNNGTTGCTANGGNNCANA