Information for 1-ATGCTGATATCC (Motif 2)


Reverse Opposite:

p-value:1e-4
log p-value:-9.880e+00
Information Content per bp:1.695
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif57.14%
Number of Background Sequences with motif3679.5
Percentage of Background Sequences with motif3.55%
Average Position of motif in Targets62.6 +/- 45.3bp
Average Position of motif in Background99.5 +/- 78.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0166.1_Six6_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATGCTGATATCC----
AATNTTGATACCCTATN

Spz1/MA0111.1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ATGCTGATATCC-
--GCTGTTACCCT

NRL/MA0842.1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATGCTGATATCC
AATTTGCTGAC----

PH0161.1_Six1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATGCTGATATCC----
ANNNATGATACCCCATC

Mafb/MA0117.2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATGCTGATATCC
AAAATGCTGACT---

Six3/MA0631.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATGCTGATATCC----
ANANGTGATACCCTATN

PH0163.1_Six3/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATGCTGATATCC----
ANANGTGATACCCTATN

PB0059.1_Six6_1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATGCTGATATCC----
ANANNTGATACCCNATN

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----ATGCTGATATCC
AAAWWTGCTGACWWD-

PH0162.1_Six2/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATGCTGATATCC----
ANANGTGATACCCCATT