Information for 18-GACTGGCTAGGG (Motif 22)


Reverse Opposite:

p-value:1e-3
log p-value:-8.909e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets93.0 +/- 0.0bp
Average Position of motif in Background113.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GACTGGCTAGGG
TGATTGGCTANN-

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GACTGGCTAGGG
CCGATTGGCT----

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GACTGGCTAGGG
GGTCTGGCAT---

NFYA/MA0060.3/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GACTGGCTAGGG
NCTGATTGGNN----

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GACTGGCTAGGG-
GGGGCTYGKCTGGGA

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GACTGGCTAGGG
---TGTCTAGA-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GACTGGCTAGGG
--TWGTCTGV--

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GACTGGCTAGGG
NNTNNTGTCTGGNNTNG-

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GACTGGCTAGGG------
NTNNNNNGTTGCTANGGNNCANA

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GACTGGCTAGGG--
NNCGTTGCTATGGNN