Information for 19-GCAGCCTCCTCG (Motif 23)


Reverse Opposite:

p-value:1e-3
log p-value:-8.909e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets170.0 +/- 0.0bp
Average Position of motif in Background12.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCAGCCTCCTCG---
TACGAGACTCCTCTAAC

HINFP/MA0131.2/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCAGCCTCCTCG-
-CAACGTCCGCGG

CTCFL/MA1102.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAGCCTCCTCG--
NGTGCCCCCTGGNG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCAGCCTCCTCG
BCAGACWA----

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCAGCCTCCTCG
-CAGCC------

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCAGCCTCCTCG-----------
---GCCTCCTCCMTCWGACTGKS

PB0010.1_Egr1_1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCAGCCTCCTCG--
TCCGCCCCCGCATT

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCCTCCTCG
CAGCTGTTTCCT--

GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GCAGCCTCCTCG----
-NGGCCTCCCAGGGAG

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GCAGCCTCCTCG----
CNNBRGCGCCCCCTGSTGGC