Information for 20-GAGTTTTTAAGA (Motif 24)


Reverse Opposite:

p-value:1e-3
log p-value:-8.909e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets182.0 +/- 0.0bp
Average Position of motif in Background121.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD11/MA0908.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GAGTTTTTAAGA-
---NTTTTACGAC

HOXD12/MA0873.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GAGTTTTTAAGA--
---NTTTTACGACT

HOXC10/MA0905.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GAGTTTTTAAGA-
---NTTTTACGAC

HOXC12/MA0906.1/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GAGTTTTTAAGA--
---NTTTTACGACC

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGTTTTTAAGA-----
-NAATTTTACGAGNTNN

PH0067.1_Hoxc12/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAGTTTTTAAGA-----
GNNNTTTTACGACCTNA

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGTTTTTAAGA-----
-ANATTTTACGAGNNNN

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GAGTTTTTAAGA--
---NTTTTACGACC

HOXC13/MA0907.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GAGTTTTTAAGA--
---NTTTTACGAGN

PH0065.1_Hoxc10/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAGTTTTTAAGA-----
-ANNTTTTACGACNTNN