Information for 21-TGCCTGGGTTTA (Motif 25)


Reverse Opposite:

p-value:1e-3
log p-value:-8.909e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 0.0bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TGCCTGGGTTTA
YCCDNTCCAGGTTTT-

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGCCTGGGTTTA
----NGGGATTA

VDR/MA0693.2/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TGCCTGGGTTTA
----TGAGTTCA

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TGCCTGGGTTTA
NNTNNTGTCTGGNNTNG

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:TGCCTGGGTTTA--
-----GGGATTANN

EGR1/MA0162.3/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGCCTGGGTTTA
ANTGCGTGGGCGTN

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCCTGGGTTTA
WDNCTGGGCA--

ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGGGTTTA--
CTGCCWVCTTTTRTA

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TGCCTGGGTTTA-
-----GGGATTAA

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTGGGTTTA-
ATGCCCGGGCATGT