Information for 25-CTGACCACACAT (Motif 29)


Reverse Opposite:

p-value:1e-3
log p-value:-8.909e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets179.0 +/- 0.0bp
Average Position of motif in Background165.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTGACCACACAT
NWAACCACADNN

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTGACCACACAT-
-AGACCACCCASR

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTGACCACACAT-
-GGACCACCCACG

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTGACCACACAT
NAAACCACAG--

GLI2/MA0734.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGACCACACAT
GCGACCACACTG

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTGACCACACAT
-AAACCACAGC-

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGACCACACAT
-AAACCACAGAN

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CTGACCACACAT-
TGTCGTGACCCCTTAAT

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CTGACCACACAT-
NNNVCTGWGYAAACASN

RUNX3/MA0684.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTGACCACACAT
-AAACCGCAAA-