Information for 1-GTTGCCCGTT (Motif 3)


Reverse Opposite:

p-value:1e-4
log p-value:-9.602e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets21.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GTTGCCCGTT
-CTGCCCGCA

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTTGCCCGTT--
--TGGCAGTTGG

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GTTGCCCGTT--
--BRRCVGTTDN

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GTTGCCCGTT-
---GGCVGTTR

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTTGCCCGTT---
GGGTGTGCCCAAAAGG

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTTGCCCGTT
-ATGCCCACC

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GTTGCCCGTT
--TGTCGGTT

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCCGTT----
NNNNTGACCTTTNNNN

ETV2/MA0762.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCCGTT
TATTTCCGGTT

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCCGTT----
NNNGTGACCTTTGNNN