Information for 10-GCAATTAGAC (Motif 34)


Reverse Opposite:

p-value:1e-3
log p-value:-7.405e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets85.0 +/- 0.0bp
Average Position of motif in Background116.0 +/- 87.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GCAATTAGAC
BCMATTAG--

Msx3/MA0709.1/Jaspar

Match Rank:2
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
CCAATTAA--

MSX1/MA0666.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
CCAATTAG--

BARX1/MA0875.1/Jaspar

Match Rank:4
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
GCAATTAG--

GBX2/MA0890.1/Jaspar

Match Rank:5
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GCAATTAGAC
ACCAATTAGC-

MSX2/MA0708.1/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
CCAATTAA--

Dlx2/MA0885.1/Jaspar

Match Rank:7
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
GCAATTAA--

EN1/MA0027.2/Jaspar

Match Rank:8
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
CTAATTAG--

Nobox/MA0125.1/Jaspar

Match Rank:9
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTAGAC
ACCAATTA---

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTAGAC
NNCAATTANN-