Information for 18-GAGTGATATA (Motif 38)


Reverse Opposite:

p-value:1e-3
log p-value:-7.117e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif13.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.0 +/- 0.0bp
Average Position of motif in Background96.2 +/- 76.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAGTGATATA------
ANNNGGATATATCCNNN

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAGTGATATA----
--RTGATTKATRGN

PBX3/MA1114.1/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GAGTGATATA---
GGGTGAGTGACAGGCGG

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GAGTGATATA-
NNANTGATTGATNTTN

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGTGATATA
TTRAGTGSYK--

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGATATA
TTTGATTGATGN-

DMRT3/MA0610.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGTGATATA--
-NTTGATACATT

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GAGTGATATA-
NNANTGATTGATNNNN

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GAGTGATATA-----
--NTGATTTATGGCC

JDP2/MA0655.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGATATA
ATGAGTCAT---