Information for 20-TCCCAATTAC (Motif 39)


Reverse Opposite:

p-value:1e-3
log p-value:-7.037e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif13.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets27.0 +/- 0.0bp
Average Position of motif in Background114.2 +/- 70.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MSX2/MA0708.1/Jaspar

Match Rank:1
Score:0.80
Offset:2
Orientation:forward strand
Alignment:TCCCAATTAC
--CCAATTAA

MSX1/MA0666.1/Jaspar

Match Rank:2
Score:0.79
Offset:2
Orientation:forward strand
Alignment:TCCCAATTAC
--CCAATTAG

EN2/MA0642.1/Jaspar

Match Rank:3
Score:0.78
Offset:1
Orientation:forward strand
Alignment:TCCCAATTAC-
-CCCAATTAGC

Msx3/MA0709.1/Jaspar

Match Rank:4
Score:0.77
Offset:2
Orientation:forward strand
Alignment:TCCCAATTAC
--CCAATTAA

DLX6/MA0882.1/Jaspar

Match Rank:5
Score:0.76
Offset:2
Orientation:forward strand
Alignment:TCCCAATTAC
--CCAATTAC

Dlx4/MA0881.1/Jaspar

Match Rank:6
Score:0.76
Offset:2
Orientation:forward strand
Alignment:TCCCAATTAC
--CCAATTAC

Dlx3/MA0880.1/Jaspar

Match Rank:7
Score:0.76
Offset:2
Orientation:forward strand
Alignment:TCCCAATTAC
--CCAATTAC

GBX1/MA0889.1/Jaspar

Match Rank:8
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TCCCAATTAC-
-ACTAATTAGC

Prrx2/MA0075.2/Jaspar

Match Rank:9
Score:0.75
Offset:2
Orientation:forward strand
Alignment:TCCCAATTAC
--CCAATTAA

Nobox/MA0125.1/Jaspar

Match Rank:10
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TCCCAATTAC
-ACCAATTA-