Information for 21-GTTTAATCTG (Motif 40)


Reverse Opposite:

p-value:1e-3
log p-value:-6.963e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 0.0bp
Average Position of motif in Background116.5 +/- 75.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GTTTAATCTG
-TTTAAT---

OTX2/MA0712.1/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GTTTAATCTG
--TTAATCCT

OTX1/MA0711.1/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GTTTAATCTG
--TTAATCCG

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GTTTAATCTG
--YTAATCCY

GSC2/MA0891.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GTTTAATCTG-
-CCTAATCCGC

PB0185.1_Tcf1_2/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GTTTAATCTG-----
-NNTAATCCNGNCNN

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GTTTAATCTG
--TTAATCCC

TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTTTAATCTG
NNTCTTATCT-

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTTTAATCTG
-GCTAATCC-

PH0126.1_Obox6/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTTAATCTG-----
CNATAATCCGNTTNT