Information for 6-TTGTAGAGTGTA (Motif 8)


Reverse Opposite:

p-value:1e-4
log p-value:-9.602e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets131.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TTGTAGAGTGTA
--BTBRAGTGSN

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTGTAGAGTGTA-
---TTRAGTGSYK

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TTGTAGAGTGTA-
---TTGAGTGSTT

ZSCAN4/MA1155.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TTGTAGAGTGTA--
TTTTCAGTGTGTGCA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTGTAGAGTGTA
--CTYRAGTGSY

FOXH1/MA0479.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TTGTAGAGTGTA
-TGTGGATTNNN

KLF4/MA0039.3/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TTGTAGAGTGTA-
--NNAGGGTGTGG

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TTGTAGAGTGTA-
--CTTGAGTGGCT

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TTGTAGAGTGTA
NNTGTGGATTSS-

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TTGTAGAGTGTA
--NTCAAGTGG-