Information for 1-GGCMSYKTKAYA (Motif 1)


Reverse Opposite:

p-value:1e-8
log p-value:-1.976e+01
Information Content per bp:1.809
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif27.78%
Number of Background Sequences with motif161.7
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets65.8 +/- 30.1bp
Average Position of motif in Background94.4 +/- 73.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGCMSYKTKAYA-
CTTGGCANNNTGCCAA

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGCMSYKTKAYA-
TGGCACCATGCCAA

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGCMSYKTKAYA-
TGGCAGNCTGCCAG

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GGCMSYKTKAYA--
------TTGACAGG

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGCMSYKTKAYA
NAGGTCACNNTGACC

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GGCMSYKTKAYA-
------TTGACAG

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GGCMSYKTKAYA--
------TTGACAGC

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGCMSYKTKAYA-
NNNNNNCTTTTATAN

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGCMSYKTKAYA-
NNNNNNCTTTTATAN

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GGCMSYKTKAYA
TNNGGGCAG-------