Information for 2-RWGYCAAMCAYW (Motif 2)


Reverse Opposite:

p-value:1e-7
log p-value:-1.786e+01
Information Content per bp:1.818
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif22.22%
Number of Background Sequences with motif79.9
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets77.8 +/- 60.3bp
Average Position of motif in Background99.3 +/- 82.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-RWGYCAAMCAYW
CGTGCCAAG----

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:RWGYCAAMCAYW
ATGCCAACC---

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---RWGYCAAMCAYW-
ACTATGCCAACCTACC

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RWGYCAAMCAYW
SCTGTCAVTCAV-

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RWGYCAAMCAYW
GGTGCCAAGT---

PBX2/MA1113.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-RWGYCAAMCAYW
NCTGTCAATCAN-

NFYA/MA0060.3/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:RWGYCAAMCAYW
-AACCAATCAGA

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-RWGYCAAMCAYW
NCTGTCAATCAN-

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:forward strand
Alignment:RWGYCAAMCAYW
---CCAATCAA-

Nr2e1/MA0676.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RWGYCAAMCAYW
AAAAGTCAA-----