Information for 12-GTCCTTCAGAAT (Motif 22)


Reverse Opposite:

p-value:1e-3
log p-value:-7.947e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets109.0 +/- 0.0bp
Average Position of motif in Background168.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTCCTTCAGAAT
ANTTCTNNAGAA-

Stat6/MA0520.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTCCTTCAGAAT-
CATTTCCTGAGAAAT

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTCCTTCAGAAT
-TTCCKNAGAA-

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTCCTTCAGAAT
GTGACCTTGRVN--

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTTCAGAAT
TGACCTTGAN---

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GTCCTTCAGAAT
ATGACCTTGA----

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTTCAGAAT
TGACCTTGAV---

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GTCCTTCAGAAT
SCTGTCAVTCAV---

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GTCCTTCAGAAT
BNTGDCCTTG-----

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GTCCTTCAGAAT
--GCTTCC----