Information for 14-GAGGGACAACAT (Motif 24)


Reverse Opposite:

p-value:1e-3
log p-value:-7.947e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets155.0 +/- 0.0bp
Average Position of motif in Background62.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGACAACAT
BTGABTGACAGS--

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGACAACAT
NTGATTGACAGN--

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGGGACAACAT---
ATGTCACAACAACAC

PBX2/MA1113.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGGGACAACAT
GTGATTGACAGG--

PBX3/MA1114.1/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GAGGGACAACAT-
GGGTGAGTGACAGGCGG

E2F6/MA0471.1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGGGACAACAT
GGGCGGGAAGG---

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGGGACAACAT--
ARGAGGMCAAAATGW

PB0141.1_Isgf3g_2/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GAGGGACAACAT-----
---GCAAAACATTACTA

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGGGACAACAT
GGCGGGAARN---

PB0122.1_Foxk1_2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGGGACAACAT--
CAAACAACAACACCT