Information for 15-AATATTTAGTCA (Motif 25)


Reverse Opposite:

p-value:1e-3
log p-value:-7.947e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets167.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0132.1_Pax6/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AATATTTAGTCA
GNNAATTAATTAATCA

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AATATTTAGTCA
CTAATATTGCTAAA

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AATATTTAGTCA
CTAATATTGCTAAA

FOXC1/MA0032.2/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AATATTTAGTCA
-ATATTTACATA

FOXB1/MA0845.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AATATTTAGTCA
-ATATTTACATA

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AATATTTAGTCA----
-NNAATTAGTCACGGT

FOSL1::JUND/MA1142.1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:AATATTTAGTCA--
----ATGAGTCATN

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AATATTTAGTCA--
ANCGCTAATTGGTCTNN

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AATATTTAGTCA
--TRTTTACTTW

POU6F1/MA0628.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AATATTTAGTCA
ATTAATTAAT--