Information for 16-CCACTTACAAGC (Motif 26)


Reverse Opposite:

p-value:1e-3
log p-value:-7.947e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets179.0 +/- 0.0bp
Average Position of motif in Background82.2 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-1/MA0124.2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CCACTTACAAGC
ACCACTTAA----

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCACTTACAAGC
ACCACTTAA----

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCACTTACAAGC
CATAACCACTTAACAAC

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCACTTACAAGC
CTTAACCACTTAAGGAT

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCACTTACAAGC
ACCACTTGAA---

ISL2/MA0914.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCACTTACAAGC
GCACTTAA----

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCACTTACAAGC
TAAGCCACTTAACATT

PH0114.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCACTTACAAGC
TAAGCCACTTGAATTT

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCACTTACAAGC
MRSCACTYAA----

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCACTTACAAGC
AAGCACTTAA----