Information for 13-CTCGGAGTTT (Motif 29)


Reverse Opposite:

p-value:1e-3
log p-value:-7.254e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets178.0 +/- 0.0bp
Average Position of motif in Background89.6 +/- 36.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RELA/MA0107.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTCGGAGTTT--
--GGGAATTTCC

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTCGGAGTTT----
NNATTGGACTTTNGNN

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTCGGAGTTT
--CGGAGC--

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTCGGAGTTT--
--GGGAATTTCC

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTCGGAGTTT--
--GGGGATTTCC

PB0161.1_Rxra_2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTCGGAGTTT-----
TCGCGAAGGTTGTACT

PB0115.1_Ehf_2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CTCGGAGTTT---
AAGATCGGAANTNNNA

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTCGGAGTTT
GCTCGGSCTC-

PB0203.1_Zfp691_2/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CTCGGAGTTT----
NTNNNAGGAGTCTCNTN

HSF4/MA0771.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CTCGGAGTTT-
TTCTAGAACGTTC