Information for 15-GAGTAGGTCG (Motif 31)


Reverse Opposite:

p-value:1e-3
log p-value:-7.254e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets98.0 +/- 0.0bp
Average Position of motif in Background108.7 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GAGTAGGTCG
GCACAYAGTAGGKCY

PB0161.1_Rxra_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAGTAGGTCG----
TCGCGAAGGTTGTACT

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GAGTAGGTCG-
TATAAGTAGGTCAA

RORC/MA1151.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGTAGGTCG
ATAAGTAGGTCA

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGTAGGTCG-
WAABTAGGTCAV

PB0114.1_Egr1_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAGTAGGTCG--
TGCGGAGTGGGACTGG

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGTAGGTCG
AAYTAGGTCA

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGTAGGTCG
AAYTAGGTCA

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------GAGTAGGTCG
NNNNGTTGATTGGGTCG

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GAGTAGGTCG
----AGGTCA