Information for 18-CGCTGACCAC (Motif 34)


Reverse Opposite:

p-value:1e-3
log p-value:-7.254e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets176.0 +/- 0.0bp
Average Position of motif in Background114.4 +/- 46.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NRL/MA0842.1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CGCTGACCAC
AATTTGCTGAC---

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCAC-
---TGACCYCT

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGCTGACCAC---
-TYTGACCASWRG

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCAC-----
---TGACCYYTGVYN

Mafb/MA0117.2/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CGCTGACCAC
AAAATGCTGACT--

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCAC
---TGACCT-

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGCTGACCAC----
--NWAACCACADNN

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CGCTGACCAC--
GGGCGATGACCAYTC

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CGCTGACCAC-----
TGTCGTGACCCCTTAAT

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CGCTGACCAC--
--NAAACCACAG