Information for 20-CTCGCAGACT (Motif 36)


Reverse Opposite:

p-value:1e-3
log p-value:-7.254e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets116.0 +/- 0.0bp
Average Position of motif in Background49.6 +/- 50.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTCGCAGACT-
---BCAGACWA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTCGCAGACT---
---CCAGACRSVB

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CTCGCAGACT-
---CCAGACAG

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTCGCAGACT--
--TGCTGACTCA

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CTCGCAGACT--
AAACCTCGTAAAATTT

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTCGCAGACT
AGGTGHCAGACA

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTCGCAGACT
CACGCA----

WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTCGCAGACT-
MCTCCCMCRCAB

HOXC13/MA0907.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTCGCAGACT
GCTCGTAAAAA

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTCGCAGACT
TBGCACGCAA---