Information for 20-GTGTGACTGGGT (Motif 39)


Reverse Opposite:

p-value:1e-3
log p-value:-7.254e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets20.0 +/- 0.0bp
Average Position of motif in Background26.2 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MGA/MA0801.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GTGTGACTGGGT
AGGTGTGA------

TBX1/MA0805.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTGTGACTGGGT
AGGTGTGA------

TBX15/MA0803.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GTGTGACTGGGT
AGGTGTGA------

TBX4/MA0806.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTGTGACTGGGT
AGGTGTGA------

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTGTGACTGGGT
AGGTGTGAAM----

NFYA/MA0060.3/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTGTGACTGGGT
-NCTGATTGGNN

TBX5/MA0807.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTGTGACTGGGT
AGGTGTGA------

PBX3/MA1114.1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTGTGACTGGGT-
GGGTGAGTGACAGGCGG

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTGTGACTGGGT--
GTAGGTCACTGGGTCA

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GTGTGACTGGGT-
---WDNCTGGGCA