Information for 4-VCTAGKGGCHCT (Motif 4)


Reverse Opposite:

p-value:1e-5
log p-value:-1.373e+01
Information Content per bp:1.559
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif61.11%
Number of Background Sequences with motif6129.0
Percentage of Background Sequences with motif12.05%
Average Position of motif in Targets116.4 +/- 50.4bp
Average Position of motif in Background100.3 +/- 69.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:VCTAGKGGCHCT
-HAWGRGGCCM-

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-VCTAGKGGCHCT
RTCATGTGAC---

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:VCTAGKGGCHCT
-NRRGGGTCTT-

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--VCTAGKGGCHCT
TCCCCTGGGGAC--

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--VCTAGKGGCHCT
TCCCNNGGGACN--

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:VCTAGKGGCHCT-
---TGGGGCCCAC

EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----VCTAGKGGCHCT
NABTCCCWDGGGAVH--

CTCFL/MA1102.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--VCTAGKGGCHCT
CACCAGGGGGCACC

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-VCTAGKGGCHCT
NTCAAGTGGN---

TFAP2A/MA0003.3/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-VCTAGKGGCHCT
NGCCTGAGGCN--