Information for 21-TGTTAAGTAGCT (Motif 40)


Reverse Opposite:

p-value:1e-3
log p-value:-7.254e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.0 +/- 0.0bp
Average Position of motif in Background88.3 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0115.1_Nkx2-6/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAAGTAGCT--
AATNTTAAGTGGNTNN

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAAGTAGCT---
NTNNTTAAGTGGNTNAN

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TGTTAAGTAGCT--
AGCTGTTAACTAGCCGT

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAAGTAGCT--
AATTTCAAGTGGCTTN

PB0154.1_Osr1_2/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TGTTAAGTAGCT---
NNNTTAGGTAGCNTNT

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAAGTAGCT---
NTNNTTAAGTGGTTANN

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAAGTAGCT--
AANTTCAAGTGGCTTN

PB0155.1_Osr2_2/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGTTAAGTAGCT---
NNTGTAGGTAGCANNT

PH0040.1_Hmbox1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAAGTAGCT---
GANGTTAACTAGTTTNN

PB0031.1_Hoxa3_1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGTTAAGTAGCT---
-GTTAATTANCTCNN