Information for 25-GTAGAGTGTATC (Motif 43)


Reverse Opposite:

p-value:1e0
log p-value:-5.798e-01
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif5179.8
Percentage of Background Sequences with motif10.18%
Average Position of motif in Targets46.0 +/- 0.0bp
Average Position of motif in Background100.9 +/- 66.6bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GTAGAGTGTATC---
----AATGTATCAAT

PB0125.1_Gata3_2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GTAGAGTGTATC------
TTTTGTAGATTTTATCGACTTA

Six3/MA0631.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTAGAGTGTATC------
-GATAGGGTATCACTAAT

PH0163.1_Six3/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTAGAGTGTATC------
-GATAGGGTATCACTAAT

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GTAGAGTGTATC
-TTRAGTGSYK-

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTAGAGTGTATC
BTBRAGTGSN--

PH0165.1_Six6_1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTAGAGTGTATC------
-AATAGGGTATCAATTAT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTAGAGTGTATC
-TTGAGTGSTT-

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTAGAGTGTATC
CTTGAGTGGCT-

PB0059.1_Six6_1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTAGAGTGTATC------
-AATAGGGTATCATATAT