Information for 5-TGAAATTTCAGG (Motif 5)


Reverse Opposite:

p-value:1e-5
log p-value:-1.344e+01
Information Content per bp:1.834
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif62.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets47.2 +/- 52.7bp
Average Position of motif in Background107.6 +/- 81.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0169.1_Sox15_2/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----TGAAATTTCAGG
TTGAATGAAATTCGA--

HSF4/MA0771.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TGAAATTTCAGG--
-GAANNTTCTAGAA

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TGAAATTTCAGG
--GCATTCCAGN

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGAAATTTCAGG
GKMTCADRTTWC---

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGAAATTTCAGG
GGAAATTCCC--

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGAAATTTCAGG--
TAGAANVTTCTAGAA

HSF1/MA0486.2/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGAAATTTCAGG--
-GAACGTTCTAGAA

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGAAATTTCAGG
--RCATTCCWGG

HSF2/MA0770.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGAAATTTCAGG--
-GAANGTTCTAGAA

SIX2/MA1119.1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGAAATTTCAGG-
GTATCAGGTTTCAGNN